Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome b-c1 complex subunit 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3322 g3322.t7 TTS g3322.t7 24645006 24645006
chr_3 g3322 g3322.t7 isoform g3322.t7 24645075 24645621
chr_3 g3322 g3322.t7 exon g3322.t7.exon1 24645075 24645151
chr_3 g3322 g3322.t7 cds g3322.t7.CDS1 24645075 24645151
chr_3 g3322 g3322.t7 exon g3322.t7.exon2 24645213 24645383
chr_3 g3322 g3322.t7 cds g3322.t7.CDS2 24645213 24645383
chr_3 g3322 g3322.t7 exon g3322.t7.exon3 24645434 24645481
chr_3 g3322 g3322.t7 cds g3322.t7.CDS3 24645434 24645481
chr_3 g3322 g3322.t7 exon g3322.t7.exon4 24645585 24645621
chr_3 g3322 g3322.t7 cds g3322.t7.CDS4 24645585 24645621
chr_3 g3322 g3322.t7 TSS g3322.t7 24645701 24645701

Sequences

>g3322.t7 Gene=g3322 Length=333
ATGTCTTACGTTATTCGTCGTGGACCTAGAAAAATTACTGCTATCGGTCGCTGGGCATAT
AATTTGTCAGGATTCAATCAATATGAAGGTCTCCATCATGATGATGTTTTGTACGAAACT
GAGGATGTAAAGGAAGCTCTTCGACGTCTGCCACAACAATACGTTGATGAAAGAAATTTT
AGAATTACTCGCGCATTGCATCTTTCAATGACTAAGACTATTTTGCCTAAAGATCAGTGG
ACAAAATACGAAGAAGATTTCAGATATTTAGAGCCATACTTGGAAGAAGTTCAAAGAGAA
CGTGAAGAAAAGGAAGAATGGAATAAGCAGTAA

>g3322.t7 Gene=g3322 Length=110
MSYVIRRGPRKITAIGRWAYNLSGFNQYEGLHHDDVLYETEDVKEALRRLPQQYVDERNF
RITRALHLSMTKTILPKDQWTKYEEDFRYLEPYLEEVQREREEKEEWNKQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g3322.t7 Coils Coil Coil 90 110 -
5 g3322.t7 Gene3D G3DSA:1.10.1090.10 Cytochrome Bc1 Complex; Chain F 3 110 1.1E-42
2 g3322.t7 PANTHER PTHR12022:SF5 CYTOCHROME B-C1 COMPLEX SUBUNIT 7 12 109 1.3E-32
3 g3322.t7 PANTHER PTHR12022 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN 12 109 1.3E-32
7 g3322.t7 PIRSF PIRSF000022 Bc1_14K 1 110 1.4E-45
1 g3322.t7 Pfam PF02271 Ubiquinol-cytochrome C reductase complex 14kD subunit 12 105 2.3E-34
4 g3322.t7 SUPERFAMILY SSF81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 13 109 1.57E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005750 mitochondrial respiratory chain complex III CC
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values