Gene loci information

Transcript annotation

  • This transcript has been annotated as DNA-dependent protein kinase catalytic subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3324 g3324.t1 TSS g3324.t1 24649248 24649248
chr_3 g3324 g3324.t1 isoform g3324.t1 24649501 24662531
chr_3 g3324 g3324.t1 exon g3324.t1.exon1 24649501 24649639
chr_3 g3324 g3324.t1 cds g3324.t1.CDS1 24649501 24649639
chr_3 g3324 g3324.t1 exon g3324.t1.exon2 24649700 24651001
chr_3 g3324 g3324.t1 cds g3324.t1.CDS2 24649700 24651001
chr_3 g3324 g3324.t1 exon g3324.t1.exon3 24651690 24651760
chr_3 g3324 g3324.t1 cds g3324.t1.CDS3 24651690 24651760
chr_3 g3324 g3324.t1 exon g3324.t1.exon4 24651825 24653392
chr_3 g3324 g3324.t1 cds g3324.t1.CDS4 24651825 24653392
chr_3 g3324 g3324.t1 exon g3324.t1.exon5 24653458 24653577
chr_3 g3324 g3324.t1 cds g3324.t1.CDS5 24653458 24653577
chr_3 g3324 g3324.t1 exon g3324.t1.exon6 24653637 24655459
chr_3 g3324 g3324.t1 cds g3324.t1.CDS6 24653637 24655459
chr_3 g3324 g3324.t1 exon g3324.t1.exon7 24655515 24661940
chr_3 g3324 g3324.t1 cds g3324.t1.CDS7 24655515 24661940
chr_3 g3324 g3324.t1 exon g3324.t1.exon8 24661999 24662531
chr_3 g3324 g3324.t1 cds g3324.t1.CDS8 24661999 24662531
chr_3 g3324 g3324.t1 TTS g3324.t1 NA NA

Sequences

>g3324.t1 Gene=g3324 Length=11982
ATGTCTGCAAAAGATTTTATAAAAACACAATTGGAAGCACTCCGTAATGCAAAGAGAAAT
AAGAATCCATCACAATGCTTACAAATCATTGATGTACTCTCTGATTATTTTGATATACCT
AAATCTTCAACTGAAATAAAATATGCAATTGAATTGTTACTAAAAGAAAATGACAAGAAA
ATTGACATCACAAAGTTTCTTATAACATCGATTACAACTAAAATATTTCATGATTGTGCC
GCTAAAGTGCTCGAACTTATTCAAAAAGTGACAATTCTACATTCGCCATTTGTGAAACCA
TTCACGAAGAATTTGATCGATGTATGTATTCAAATCATCAAGTGTGCTGAACCTAGTGCT
CGTTTTAAAGAGATGGCAGTAAAATCAATCGATGAAATTATAAGTAGAGGTGCACTGATG
GATGAGGAGCGTGATGAAAAAATCAAAGTATTAATTAAGACCCTTCTTTCTGTATTCGAT
CAATCTCTTAAAAATAGATTATTTAACAATACATTTGAAGTCTTGGGAAAAATTTCAAAA
ATGTTTCCCGATAAATTTACGCCAGAAAATGCAAGAAAATTTCTCGATAAAATGCTTACA
GTCATTCAAAATCTTTTTAAAGATGATAAAGCATCCACTTCATTAATTTTAGTTAGTGGT
GCTGTAGATGGTTTAAAAAATCATTTAGCTAACTTTACACCGACAGAGAATGAAGATGAA
CAATTTAAGAGAAGATTTTATGAATGTATGATTCTCTTATCTGATCCTTTCAAACATGGA
GCAAATTCCAATATCAATACCGAATCAAACAGAGTTCCATTTAGAAACATGTTAGCAGTT
GTCAATCTGTATGGACATTTAGTCAGTGAGTTTATTTTTGAAGATCATTTGAAATGGCAC
AATATTTTACAAAAATGGATAAGCTCAAAAAATTATGAGGATAAAAATGCTGGTGTTCTT
GCAATCCAAACAGTACACATCGAAATTGCAAAAAATATTGAAAAAAGGAAGAATGATGAA
GACAAATCAATTTTGCTCTTTTACATGAATCACTTTCAAAAGACACTTGAATCGCCAAAT
TCTGAAACACATGAAATTCGTATAGCTATCAAAGGATTCGGTTATATGGCAGGATCTGCA
AAAATTTTACTTGAACCAAAATATTTGAATGATCGTTTTGATTTAGTAATGCAACGCACT
GAATATTCATATTTTGTCGGAAATAAAATGAAACGCAGAGAAGTACTTGAACATTTACCA
AATTATGTTGAAGCTCTTTCAAAAATTATCAGTCAAATTGATGAAATATCGGGTATTCAA
CTACAGTCACTTCAATCGATCATGATTATTTTAATCAAAGATTTTCATTTTCTATCAACA
TCACATCACAATTTGGTTGCAAATGGTTTATTCGAAACCTTTATTAATTTAGAAAAGATG
GGCGGAAAAATATTTAATGATATTGTCGAATCCATTATATGGCAAGGAATTTTATGGACC
TGTAGTCATCAATTAAAATATGACTTGGAAAACAATTATGAGAATATCAAAGATTGGAAA
GAGACTATCACATATGTTCGCTATTTACCATTATGGAAGCGACTCTTAAATCCAACAGAT
GAAAATCACAAACGAATTGGTTCAACAATTTATGAGCATTTTATTAAAAATTTATTCCAA
ATAATTGATAAATTGGATTTAAGCACAAGAAAAAGAAAGTATTTTGATGAGTCGTCAAAT
ACTGATGTGGAATTCTTTTTCACAGACATTTCACTCGATTTGGAAGCAGTGCGACCAGAA
AATTTTCAAATTCTCTACAATTTGACTCAATTTTATAGTGATTTAATTATTCAGCAAAGT
AATGAGGAACTTGAAGAAAAGTTTTCTGAATGGATTGAACTTTGGTTAGAAAAATCAATT
TTTCTCGCTTTAAAAAATCCTCTTGTTTCGGCATTCATGTATTTAATAGAGATCGCATTG
AAAATAATGGAGAGATTAGATTTTATAAAGAAAAACAATCATGATAATAGTTTTATGGAA
TCAAAATTGGTTGCCACTTTAAAATCTTATATCAAATTATTGTTTTCTCGTGCCAAGCAA
GTTTCTCATGAACTTCAAATTGCATGTCTCCAATTAATTTTTCAAGCACCTATCGACATT
CTCAAAGAATATATTGAAGAGTTTATTTCAATTCTTATTCTTGGTTTTACTATTGGAAAG
AATATCGTGAATTTAGCTCACCATTCTCTTACTTGCTATGAAAAAATTGTTAACGAATAC
AACAACGATCCAAAGAAGCGAAGAGTGCTGCTCGAAAAAGTATTACCATGTTTAGAATCA
TTTTTATCAAGTGGAAAAGAATTGTCAACTGATAGTGAATTAAAAGAACTGAAATATAAG
CGACAACGTAAGAGAATGATTCTTCAATCGATTGAAACAGATTTAGTGAGGCTGAAAAAA
CGAATTTTACTTTTCCTCGGAACATGCACACCTGAAGAATCTCAACTTATTCTTTCAAAT
TTTCAACCGAAATTAACTCGTGAATATATCACAAACATTTTCAATGTAACATTGCATTCT
GATGATGAACTTAATGCTTTGATTTATCTTGATCAAATTATAGAACGCGTTTGTTATATT
GCACTTCATTCAAGTGATAGATCGATAAAAATTTCTGGTTGCGAACTTCTTCATGGTATG
GTTCTCTATATGATGGGAAAAAATTTAAAGGAAACAGAAACTTTACCAATATGGAAGGAT
CTGTGCAGAAACATTATCATTCTAGGAGCTGAAAAAGATCAAACAATTAGAGCACTCTTT
GAACCGCTATTGATGCAAATGATGCACTTTTATTCAAAACCTGATCAAATCTTAAATCCA
TTATCGACAGTTCTTATAGAAGCAGTGCTTGAAATGATTTCTTATCGTGATAATACCATT
CAAGATTTATCGGCACGACTTTTGCGAGAATACATCTTATGGTTGATGAGACAGACTAAC
AAAGAACAAAGAAAGTTAGCTCCTATAACACTTGTAGATTTCTTTCAAGAATTGAAAAAG
ATGTCTATTGAAACTGAACAATCACGAAGAATAGGAGCAACATTAGCATTCAACAATATT
TATCGAATCATAAGAGAAGAGGAATCACTTATTGACATCTATTGGATTTATCTACTTGAT
GTGTTTTGTTTAAACTTTCGAAATACAGAGGATTTTTCTAATCATCTAGACAATTGTTTC
GTTGATGACAGGCGGTTTGAACAAGTTTCATCTTCTCTTGATCACATAACAAGAGTATTT
ATCGAACGAAGTGATATATTTAATCATTCAAATAAAGATCGAATTAAACCTTTTGGATTT
GATGGTGTTATGTTCAATGACATTTTGAATTGGATATTTAAACAATGCATAATGCAACAA
TTTTTTTATCGACAAAAATGTATGCAAATTTTTCTCAAAATGGTTCCAGAAAAAGAGAGT
AAGCGAAAATATTTTGAAAGTAATTGGACAATAAAAACCATAATAAACCTTAGCGAAGTA
CAAACAACAATTGTACAGAAACCAGATCTTTCCTTTTTAAAAGGTACAACTGAACCGATC
TATAAAGAAACTTACAATTGGATGGAAAATTTTCTTCGCCTTCTTGATTTCTATCACTGG
TTACTTAAAAATGAATTGATTGAAAAAGATATTGATGCTCTATTGAACTCTTCAATAATT
CGTCATTCAATTAACTATTTCTTGAGCAACGTGGTTGTCAATGATTTGAATACACTTGTA
AGATCAATCGATGAGAACTTGATTAATAGTACACAAATGAGCTATGAAGCAAAAATGTAC
AACCGAAATGTCGATAAAATTTATGTCATCCGCAACGCTACAATGATAAAAATATTAGAT
TTTCTAGAAGTTCTTATGAAGCAATATTCACTTGAAAAATTACTTAACAAAAACTATTTG
ATGCTTTTAAAAATGATTAAAAATTTGATTTTTAATCCACAAAAATTAAGTTTTGATTAC
AAATCAAAAGGTGTCATCAATAATCTTAACAATCAAATTCTACAGTTCATCGAAACAGCT
TCTAAACACTCAAAAGCTTTGCATAATAAACTTTTGAAATTATTAGAAAACAAAACTTTT
AAGCATATGAGTAATTTCTCTACATCACTTGAGACATATTTAAAGAACAACGTTATTGAT
GAGATACAAGAAAGTAAACTCAGTGGCTTGGATATTTTATTTTCAAATTTTAAGAAACAA
ATGAATATAAAACGGATTGAGGACATTGCTCGAGATTTACTAAAGAAACTATTCAATGGA
CTTGTTGAAGAAAATATAGAAATACATCAGCCAAGATCTTTTAAACCATCTGTAAAAAAG
TTTATAAATAACATCATGAAAGTATGCCTTAAAGTAAATAGCTTTTTGGATGAATTAATT
CTTTTTATTCTCGACGATACTCCATTAAAAATTACTGGTATGTGCAAAATAACAAAAGGA
GAAAATTTTATACAAATTTTCAAACATCCTGTGTTTCAAACATTTACTATGCAAAATCAA
CATGTCGTTACTCAATTAGCTTCTAAATTGGACGACTCAACCTCAAATAACTTACGAATC
TTCAATATTTTGACAGATATAAATGAATTTATTTACAAGTATTATAATAATAGATCAGAT
TTGCTAAATGAAAACATTCACACTATGGTATCAATTTGGCCAACAATAATGAAAACTATA
AATAATATGAATAATGATTTAAATTGTGTTGATATGGCTATCATTAATTTGATAACTCAT
ATAGCAATGGTGTGTCCTTATGAACTTCATTTGCTTTGTCAACGTTTAGAAGACTTTCTA
AAATGGTTACTCGGCATTTTCGAAAATAAAGAAAATTCATTGGAAATAAAATCGAAGGCT
GTATTCCTTTTACCGTGCATAACACACAGTGAGGACAAAAATAATGATGAATTAATGAAA
GCTCTTAATAAAATTCGACAACACCATTTACCTCTAAGAAGTATGGAATTTCCTGATGGA
AGCATTCAGAAATCAAGCTTTGTTGTCTTCACTAATGCACTTTTTCAAGCTCTTTTAACA
AGTAAATCACCAATAATTTATAAGTTCATTATTCAAATCACAATCAATGACGAAAAATAC
ATGCTTGAAGATAAATTACAAAATGTCCAGAAGAAACTAATGGAAAATCTGAGTGAAAAG
GAACAAGAAACATTTTTATTACAAACATTCGATACATTTCTTGATGAGTCAATCGATCCT
GAAATAAGGCTTACAATTGTATCACGCTATCTATTGACTATAATGAAAAATTGCCTAGTT
GAAACTATGCTTGCTTTCATTCGACAAAAAATTGGTCAAATTTGGCAATTGATTGATTCA
AATTTTGATTTTGATCCCGCCTCAGGTTTTGTAAATAGATCTGGCGGTTATTTAATTATA
GAAGCATTTGTGGCAGCTGTGCCAAAGGAAAAGATTGAAAGTGCAACTTATTCATATGGA
GGAAATTTGAATAATGGACTTACTTTTATCAAAGAATTTATTATGAAGGCAAAAGATGTA
AGACGTGACGTAGTATTCGTTGTCGATGATCCAGCTCTACAAGAAATATTTAGAAAGTTT
CAATGTTATTGCTATAGAGCATTAGCAGCTATGGTTGCGAATACTAAAGATTTACCAGAA
GTTTTCAATTTGTGTCTGTTTCAAGAGAATCCTAGAACAAGATCGTTTATTTGGCGAAAA
ATAATCAACGTCTTAGATGATAACCTTTATTCAAATTGGTCTCAAGAATTTAATGATTTT
CCCAAAGTTAAAGAATATATTGTAAGCATTAAAGAAATGGATGTTAATACAGCAAACAAG
CAGAATAAGTATATTGAAAAGACTTCAATTTTTGATCGATCATTGAGTCAAACACTTACG
AAAACAGATTTATCTTATTCTGTTGTATTATCAAATCGAGAAATGCTTGAAAATGATCAA
CGAAATAATGAAAAGCAAAAACAAATGCGAATCAATTTAGAATCCTTACCAATTAATGAT
CATGAAGTTATGGGGGCCATATGTGCTGTGATCAACACAATATTCACAAGGAAATTTTCA
ATTTTCTCAAACTTTGATAATGCTGATCGTAAAAAGTATGAATGGGTTATTTCAATAGCA
AATTCTTTAATTAGCAATGATCAACATAAAAATGTAAAATTATTTTTGGCAAAATTAATT
GACAATTGTCGAAATGTATTTTCGCATTATGCAGAATTTTTACTTGAACCATTATTAACA
ATTCTTACTGATGGTAGTCTCGGATTCAATAGTATGAATTTTTTCATTACTGACATAACA
ACAATGTTGATATCATGGAGTCATATTTACAAGCCAAAAAAATTTGAAGAAAAAGAATGT
TCAGGATTATTACTAAAATTTTTAATGACTAATGCATATCATGAAAAGAATGAAATTTTT
AAAATGAATTTGGAATTGATAAAGAGAGTGGTTGAAAGTTGGAAAGATGTACTTGCAGGA
AAAATTCCCACTCAAATTTTACTTGAAATGTTAAATAATGATAATGTGAAATTAATTTGT
GGAATTCAACTTAATGCTGTTATATTAGCAAATGATCTGGTTCCTTGGAACACTGATGAG
CAGTGTGAAATGTTTTTAAAAGCAATTTTAAATTCATTTGACAAAGAAAATGAAAAAATT
TATCAAGCTGCAGCACAACTCTGTGGGCTATATTTAAACACTATTAATAATGAAAATTAC
ACTATTATTGTAAGGAACAAAATGGAAAAATTTGGCTCAAGAAAAGACAAAACCAATTTA
TTTTTGCAACTACTTTATGGAATACAGAAAAGTTTTCCATCAATTTTAGATACATTCATG
AATCGTATAGTTCAGTCGATAACACCAGCAATTCGAAAAATAAAATGTATGTATCTTGAA
ATGTTCTTGTCACGCATGGAAATATTCCAAACAAATGTTCATCGTGAGTTAACTGTTATA
AAAATTAAAGACCTTCTTAAACAAAGCGAATTTCAAGTCCTTTCATTACATATTTTGAAC
AAGAGCTTAGAATATCTCACAAGTGCTCAATTTTTCACATTTTATGATGAATTAAATTAT
CTCGTAAACTCTGCAAACAGTGAAGTGAGAAATATAATTTATGAGATAATGATATATTCT
ATTGAAAAGTTTGCAATTGATGCAGATTTTGATAAAAAAAAGCCACTGAAACTTATTTTG
AAGGGTTTTGAAGACACCAATCCAGAAATTCAAAATCGAGTAATTAAATTTTTCAATGAT
AATAGTGGTTTATCGACAAAACTGGTCGTTCGCTTTGATGAATTACTGTCTGGTTATTAT
GACGTCAAATTAGAAGATCAATTTTTGCATTATGCCACTCAATTGTTACTTCAAATTTCT
GTAAAACATAATAGATCGAAGCGTAAACTATTAGACTATGATCAACGAAATGACATTAAT
TTTTTTGAAGTTCCTATTACAACAAAATCATCATATTCTCAAAAAAATTTGCCACCAATG
TTTATAGGTTCACAGCACCTAAAACTTTTGGCTGGTGATGGTTCACAATATAGTCAAATG
ATTCGTGCAACACAATTAAACAGCAATAATCATAGAATGTTTGAGCCTACACAAAATCCA
GAAATTATTGAACAAGTACCACAAACTTTCAAATTTAATCAAACACAAAATTCTTTATTA
GTCACTCTTAAGCCTCAATATTTAGATCGACGTTCTTCGTTCACATCCCAAAATCCTGAT
GATGATAATTTCGAACTTCAAATTCAAAAGAATAAGGAAGAAAAATTAAATGCAGATTCA
TCACTTGATTATTTAAGAAGACGTATTGTTAATAAAACTGAAAATCAGAGATCCAAAGAT
TATGCATTGCGTGCTGTTGATCGAAGAGATTTTGTGGAAGCCTCGACACATGATAAAATA
CAACAATTGAAACAAGGGAAAGACCCTGTACTTTATCGACGTTATCGAGTTGGAGATTTT
CCTGATTTCTTTTTCAATAGTTTGGCTATTCTTTTGCCATTGCAAGCACTTGTGAAAAAA
GACGTTGTAATAGCTCGTCACATTTTTATATCAATATTCACAGCATTGGCTGCAATATTT
CGTGAAAACAATGATTTCGAAAGTGAGAAGAATTTTTATTCGTCAATTAATACTTCTGTT
ATGAATGTTCTAAAAAATTCTAAAGAATCCAATTCTTACTTGCTTGCTGTCCTTGTTGAA
ATGGCCATCAAAAGTGAAAAATATTTAGAAATTTCACCAGAAACACTCAACGATTCTTTG
TCAATCACTGGAATTTTATTTGCTGAAAGTCAAATAATTCACCTAAATCAATTCCTAACA
AATGAAAATGATGATGAGATTCGTAATAAACGAGTAAGATTAGATGAAAACGATATAAAA
CTACAACACTGGATAAGATTGATTGATTTTTATCATAAAATAAATGAACTTGAAGTCGTT
AATGGAATTTTAGAAGACAAGCTTAATTTGGACGAACAAGTAAAAATTTCTTTACTAAAA
GCAATTAAATGTGAATCAAATAATTCATTTAAAGAAGCAATGTCGCTATATAGTAATCTA
CTACAAAATAATATTGCTAGAAATAACAGTGAAAAAGATTTATATTACAACTCTTACTTT
AATTGTCTTGCAAATTTGAACGATTGGGATCTTATTACCGAAACTGCTCAATCACAATTC
AACAGTTATGAAGAAATTTGGGACGAGAAGATTCCTTTTTATCAAAACACGGTTTTACCT
ATGCTTCTTAAAGGAGAACTTCGCAAAATCATTGATGGAAACACGAATGATGGTTTTATA
AGTGTAATCGAAGAATGGCTAAATGATGATAAGAAAAGCGAATATTTGCAAAGAAAGTTC
CCTGAAGAAATTGCTATGCTTAATATAATGGATGAAAATTATACAGCATGTTGTGTTGAG
TTAGATAAAACATTAAATACTGTAAGCAACGAATGGAGTTATCTCGAAATGTATGAAGAA
AAAATTCGACTATTAAGTTTATCTAGAAACTTGGCAGAACTCTCAAATTTCGTCAATATC
ATGGCTGTCACATCAATTGATGCATATACAGAAAAACAAATACAAAAGCTTTATCAAAGT
TGGAGGGTCTCAATGCCAAAATCATCAGATTCGTTAATAGTATGGAACGATTTGTTGGCT
TATCGTAAAACATTTCTCTCTCTTATGCTTCCGAAATTCAATATAAGCGACGAACAACGT
CAACTCTGCGAATCTTTTTTGATTGACAGTGAACGCAATCTTTTAGAAGTTTCATTTAAA
CAAAGAAATATTGACACGGCTAAAGTTTTAATTCAAATTTTACATAAAGAGCTACAAGAT
TCAACAACTGAAAACGTGCTCAAGTATAATCTTGCATTTGGGAAATATATTATGATGATT
GCAGAACGAGAATCTGTTAGCAGCTTTACTAAGGGAATCAAACGTTATGGCAATGCTTGG
GATAGTATCATAAATGGAGTTTTAAATGATATTGGAACAAATTTCGATGATATTAAAATT
GAAACTCTCTGCTGCGTAAGCCAAATATCATTAAATTTGATGAAATTGTATCAAAAACTT
GACAACGATAATGAAGTTGCTGGCTATAAAAGTGGTTTTATGGAACTAATGAATGTGATC
GATGAAAATGCTGAATTGAAACAAAGTTTACTTGAATATAGTGTTCGTGCATTGCAAAAT
GCTAGAGATATAGCTCAAGAGTCTCTCAACATTGACTATAGTCCTGAAAAAGAAAATCAA
TTGGGTGAAATTTATTTCAAACTTGGTCAATATTATCGATTTGTTTTTGCTGAAAAAATT
GCTATCTCTAAAAGTGTACAACTAGAAATGATAAAATCAATATTCAGAGCGATTTTTTAT
GGACAAGATAATGCAAAAATATATATTCCTTACATTATTTCACAATTGCCAGTACTTACC
AAAAATCAAATCACAACAGAATTTAATAAACAATTGAACATGGTGCCTGAATGGATATTT
ATTCCATACATCTCTCATATATTATCAAATTTTGATTTCGAAAACGATTGCTACCTTGAT
CAATTGATTCTTAATTTAGCCAAAAAGTATCCTAATGCACTATATTATCCCTTTAAGCTA
TCGCGTGATAATTTTTATCATGTGAACGAGTCTCAAGTAATGGAAAAGGCACTTGTAAAT
GAAATTAATAATATTGTATCAATTCCTATAATGGAACGCTTTACTTCTGCATTACAATGT
CTTGTAATACCTGAAAAACTTGTTGAAATACATTTTCAAAATTTCTGTGATGAAGTTGTT
GAGAGACGAATTGATAATAGCAAGTACCAGGAAAAAATTCAAAATATGTTTGATAAAATA
TTCAAACATAACAATGACATGAAAGGTAGCGATTTCAGTAAAATTCAAAGAACATATTAT
AAATTGATTGTTGAGTTGAAAAAGTTCAATTGGGATACCGAAAAAGAAAAAGCATATAAA
CAAATAAGAGAAATTCAAAAGACAATAAGAAATGGAACAAGAATTCAGCAGTCACAGACA
GTTGAACTTAATAAATTATGTCAATGGCTTGCTGAATACAAATGGAGTGGTAATGAGGAT
TTTATTGAAATTCCTGGACAATATAAAGGCAATATTAAACCGTTCATTGAGAATCATGTG
AAAATTGTTCGTTTTGAGACACGATTAGATGTTTTTAATTCAAAGCAATTGCCTATCAAA
GTTGGAATATATGGCAGTGATGGTAAAATCTACAATTTCATAGTGAAATATGGTGAAGAT
CTTCGTCAAGATCAAAGAATTCAAGAAGTAATGGATTTGATGTCAAGCAAACTTACTTTA
GATAAAAATTGTAGAAAAAATCGTCTAAAAATTGACACTTATCAAGTCATTCCCATAAAT
TCGACATGTGGACTTTTGCAAATGGTTACGAATACTGCGACAATAAGTGAATTTATGCAA
AAATCTGGCAAATCATTTCTTCAAAAAGATTTCAATGAATATGTGCTAGAAGCACGCAAT
AAATTTCGTGAATTACTTCTTGCTGGAAATAAATTTACTGGATGGATTGAAACTTTTGAA
AAGGCTCTGATAACACACAGTCGTGACCGATTGATTGAAATATTTGAAGAAATCAGCAAT
CAAGTACCATTAAATATTATCCAAAAATCATTAACAGGATTATCACTTACGCTTCATTCT
TATTATATTTTACGAAAAAATTTTGTAACAAGTTTAGCTGCGATGAATGTTACTCATTGG
CTTCTTGGTATTGGTGATCGACATCTGAATAATATTCTAATCAATACATCAAATGCACGT
TTAATTGCTATTGATTTTGGTATAGCATTTGGAACAGCAGCATCATTAGGTATCGCAGAA
TTAATTCCTTTTCGTCTTACACCACATTTCGTTAGTGTTCTTTATCCAATGGAAATTAAT
GGTTTACTAAAAGAAAATATGAATCATACATTAAAATGCTACCGTGATCATAGAGAGACA
ATCGTTGTATGTCTTGAAGTTTTTGTGAAAGAACCAACTCTTGATTGGTTAAAAGAAACA
AAGAAAAAGAGCATTGGGAGCATAAATGTAGAAAATGAAAGTGTTGCATCATCTACTTGG
GAACCTGAATCACGTATTGATATTGTTAAACGAAAATTAAATGGTCATAATCCAACAAAA
ATTTTAATTGAAGAATTAAATTCAGGACATGTAGGCTCAAAACGAGAAATTTTTAATGCA
TATAAAAACTTGATTTATGGAGAAGAGAATTGCACAAGATATAAATATCAACATGAAGAG
CTGAATTTAAGGACTGAAGATCAGATCGAATGTTTGATTGAAATAGCTACAGATAAGGCA
GTTTTGGCAACTACTTATGTAGGATGGGACAGTTGGTTTTAA

>g3324.t1 Gene=g3324 Length=3993
MSAKDFIKTQLEALRNAKRNKNPSQCLQIIDVLSDYFDIPKSSTEIKYAIELLLKENDKK
IDITKFLITSITTKIFHDCAAKVLELIQKVTILHSPFVKPFTKNLIDVCIQIIKCAEPSA
RFKEMAVKSIDEIISRGALMDEERDEKIKVLIKTLLSVFDQSLKNRLFNNTFEVLGKISK
MFPDKFTPENARKFLDKMLTVIQNLFKDDKASTSLILVSGAVDGLKNHLANFTPTENEDE
QFKRRFYECMILLSDPFKHGANSNINTESNRVPFRNMLAVVNLYGHLVSEFIFEDHLKWH
NILQKWISSKNYEDKNAGVLAIQTVHIEIAKNIEKRKNDEDKSILLFYMNHFQKTLESPN
SETHEIRIAIKGFGYMAGSAKILLEPKYLNDRFDLVMQRTEYSYFVGNKMKRREVLEHLP
NYVEALSKIISQIDEISGIQLQSLQSIMIILIKDFHFLSTSHHNLVANGLFETFINLEKM
GGKIFNDIVESIIWQGILWTCSHQLKYDLENNYENIKDWKETITYVRYLPLWKRLLNPTD
ENHKRIGSTIYEHFIKNLFQIIDKLDLSTRKRKYFDESSNTDVEFFFTDISLDLEAVRPE
NFQILYNLTQFYSDLIIQQSNEELEEKFSEWIELWLEKSIFLALKNPLVSAFMYLIEIAL
KIMERLDFIKKNNHDNSFMESKLVATLKSYIKLLFSRAKQVSHELQIACLQLIFQAPIDI
LKEYIEEFISILILGFTIGKNIVNLAHHSLTCYEKIVNEYNNDPKKRRVLLEKVLPCLES
FLSSGKELSTDSELKELKYKRQRKRMILQSIETDLVRLKKRILLFLGTCTPEESQLILSN
FQPKLTREYITNIFNVTLHSDDELNALIYLDQIIERVCYIALHSSDRSIKISGCELLHGM
VLYMMGKNLKETETLPIWKDLCRNIIILGAEKDQTIRALFEPLLMQMMHFYSKPDQILNP
LSTVLIEAVLEMISYRDNTIQDLSARLLREYILWLMRQTNKEQRKLAPITLVDFFQELKK
MSIETEQSRRIGATLAFNNIYRIIREEESLIDIYWIYLLDVFCLNFRNTEDFSNHLDNCF
VDDRRFEQVSSSLDHITRVFIERSDIFNHSNKDRIKPFGFDGVMFNDILNWIFKQCIMQQ
FFYRQKCMQIFLKMVPEKESKRKYFESNWTIKTIINLSEVQTTIVQKPDLSFLKGTTEPI
YKETYNWMENFLRLLDFYHWLLKNELIEKDIDALLNSSIIRHSINYFLSNVVVNDLNTLV
RSIDENLINSTQMSYEAKMYNRNVDKIYVIRNATMIKILDFLEVLMKQYSLEKLLNKNYL
MLLKMIKNLIFNPQKLSFDYKSKGVINNLNNQILQFIETASKHSKALHNKLLKLLENKTF
KHMSNFSTSLETYLKNNVIDEIQESKLSGLDILFSNFKKQMNIKRIEDIARDLLKKLFNG
LVEENIEIHQPRSFKPSVKKFINNIMKVCLKVNSFLDELILFILDDTPLKITGMCKITKG
ENFIQIFKHPVFQTFTMQNQHVVTQLASKLDDSTSNNLRIFNILTDINEFIYKYYNNRSD
LLNENIHTMVSIWPTIMKTINNMNNDLNCVDMAIINLITHIAMVCPYELHLLCQRLEDFL
KWLLGIFENKENSLEIKSKAVFLLPCITHSEDKNNDELMKALNKIRQHHLPLRSMEFPDG
SIQKSSFVVFTNALFQALLTSKSPIIYKFIIQITINDEKYMLEDKLQNVQKKLMENLSEK
EQETFLLQTFDTFLDESIDPEIRLTIVSRYLLTIMKNCLVETMLAFIRQKIGQIWQLIDS
NFDFDPASGFVNRSGGYLIIEAFVAAVPKEKIESATYSYGGNLNNGLTFIKEFIMKAKDV
RRDVVFVVDDPALQEIFRKFQCYCYRALAAMVANTKDLPEVFNLCLFQENPRTRSFIWRK
IINVLDDNLYSNWSQEFNDFPKVKEYIVSIKEMDVNTANKQNKYIEKTSIFDRSLSQTLT
KTDLSYSVVLSNREMLENDQRNNEKQKQMRINLESLPINDHEVMGAICAVINTIFTRKFS
IFSNFDNADRKKYEWVISIANSLISNDQHKNVKLFLAKLIDNCRNVFSHYAEFLLEPLLT
ILTDGSLGFNSMNFFITDITTMLISWSHIYKPKKFEEKECSGLLLKFLMTNAYHEKNEIF
KMNLELIKRVVESWKDVLAGKIPTQILLEMLNNDNVKLICGIQLNAVILANDLVPWNTDE
QCEMFLKAILNSFDKENEKIYQAAAQLCGLYLNTINNENYTIIVRNKMEKFGSRKDKTNL
FLQLLYGIQKSFPSILDTFMNRIVQSITPAIRKIKCMYLEMFLSRMEIFQTNVHRELTVI
KIKDLLKQSEFQVLSLHILNKSLEYLTSAQFFTFYDELNYLVNSANSEVRNIIYEIMIYS
IEKFAIDADFDKKKPLKLILKGFEDTNPEIQNRVIKFFNDNSGLSTKLVVRFDELLSGYY
DVKLEDQFLHYATQLLLQISVKHNRSKRKLLDYDQRNDINFFEVPITTKSSYSQKNLPPM
FIGSQHLKLLAGDGSQYSQMIRATQLNSNNHRMFEPTQNPEIIEQVPQTFKFNQTQNSLL
VTLKPQYLDRRSSFTSQNPDDDNFELQIQKNKEEKLNADSSLDYLRRRIVNKTENQRSKD
YALRAVDRRDFVEASTHDKIQQLKQGKDPVLYRRYRVGDFPDFFFNSLAILLPLQALVKK
DVVIARHIFISIFTALAAIFRENNDFESEKNFYSSINTSVMNVLKNSKESNSYLLAVLVE
MAIKSEKYLEISPETLNDSLSITGILFAESQIIHLNQFLTNENDDEIRNKRVRLDENDIK
LQHWIRLIDFYHKINELEVVNGILEDKLNLDEQVKISLLKAIKCESNNSFKEAMSLYSNL
LQNNIARNNSEKDLYYNSYFNCLANLNDWDLITETAQSQFNSYEEIWDEKIPFYQNTVLP
MLLKGELRKIIDGNTNDGFISVIEEWLNDDKKSEYLQRKFPEEIAMLNIMDENYTACCVE
LDKTLNTVSNEWSYLEMYEEKIRLLSLSRNLAELSNFVNIMAVTSIDAYTEKQIQKLYQS
WRVSMPKSSDSLIVWNDLLAYRKTFLSLMLPKFNISDEQRQLCESFLIDSERNLLEVSFK
QRNIDTAKVLIQILHKELQDSTTENVLKYNLAFGKYIMMIAERESVSSFTKGIKRYGNAW
DSIINGVLNDIGTNFDDIKIETLCCVSQISLNLMKLYQKLDNDNEVAGYKSGFMELMNVI
DENAELKQSLLEYSVRALQNARDIAQESLNIDYSPEKENQLGEIYFKLGQYYRFVFAEKI
AISKSVQLEMIKSIFRAIFYGQDNAKIYIPYIISQLPVLTKNQITTEFNKQLNMVPEWIF
IPYISHILSNFDFENDCYLDQLILNLAKKYPNALYYPFKLSRDNFYHVNESQVMEKALVN
EINNIVSIPIMERFTSALQCLVIPEKLVEIHFQNFCDEVVERRIDNSKYQEKIQNMFDKI
FKHNNDMKGSDFSKIQRTYYKLIVELKKFNWDTEKEKAYKQIREIQKTIRNGTRIQQSQT
VELNKLCQWLAEYKWSGNEDFIEIPGQYKGNIKPFIENHVKIVRFETRLDVFNSKQLPIK
VGIYGSDGKIYNFIVKYGEDLRQDQRIQEVMDLMSSKLTLDKNCRKNRLKIDTYQVIPIN
STCGLLQMVTNTATISEFMQKSGKSFLQKDFNEYVLEARNKFRELLLAGNKFTGWIETFE
KALITHSRDRLIEIFEEISNQVPLNIIQKSLTGLSLTLHSYYILRKNFVTSLAAMNVTHW
LLGIGDRHLNNILINTSNARLIAIDFGIAFGTAASLGIAELIPFRLTPHFVSVLYPMEIN
GLLKENMNHTLKCYRDHRETIVVCLEVFVKEPTLDWLKETKKKSIGSINVENESVASSTW
EPESRIDIVKRKLNGHNPTKILIEELNSGHVGSKREIFNAYKNLIYGEENCTRYKYQHEE
LNLRTEDQIECLIEIATDKAVLATTYVGWDSWF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3324.t1 CDD cd05172 PIKKc_DNA-PK 3582 3878 1.01124E-92
11 g3324.t1 Coils Coil Coil 1723 1743 -
10 g3324.t1 Coils Coil Coil 1996 2016 -
8 g3324.t1 Gene3D G3DSA:3.30.1010.10 - 3513 3670 9.0E-15
9 g3324.t1 Gene3D G3DSA:1.10.1070.11 - 3728 3901 8.2E-24
4 g3324.t1 PANTHER PTHR11139:SF68 DNA-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT 524 3989 3.6E-208
5 g3324.t1 PANTHER PTHR11139 ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 524 3989 3.6E-208
3 g3324.t1 Pfam PF08163 NUC194 domain 1763 2132 1.6E-58
1 g3324.t1 Pfam PF00454 Phosphatidylinositol 3- and 4-kinase 3611 3876 9.1E-41
2 g3324.t1 Pfam PF02260 FATC domain 3963 3993 1.6E-7
13 g3324.t1 ProSitePatterns PS00331 Malic enzymes signature. 206 222 -
14 g3324.t1 ProSitePatterns PS00916 Phosphatidylinositol 3- and 4-kinases signature 2. 3771 3791 -
19 g3324.t1 ProSiteProfiles PS51189 FAT domain profile. 2859 3404 11.146
18 g3324.t1 ProSiteProfiles PS50290 Phosphatidylinositol 3- and 4-kinases family profile. 3611 3993 36.179
20 g3324.t1 ProSiteProfiles PS51190 FATC domain profile. 3961 3993 11.676
17 g3324.t1 SMART SM01344 NUC194_2 1760 2140 1.9E-35
16 g3324.t1 SMART SM00146 pi3k_hr1_6 3612 3931 1.9E-37
15 g3324.t1 SMART SM01343 FATC_2 3961 3993 1.6E-7
6 g3324.t1 SUPERFAMILY SSF48371 ARM repeat 20 472 3.87E-7
7 g3324.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 3532 3884 2.55E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity MF
GO:0005634 nucleus CC
GO:0004677 DNA-dependent protein kinase activity MF
GO:0003677 DNA binding MF
GO:0006281 DNA repair BP
GO:0005524 ATP binding MF
GO:0016301 kinase activity MF
GO:0055114 NA NA
GO:0005515 protein binding MF
GO:0006303 double-strand break repair via nonhomologous end joining BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values