General information for g3324.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3324 is located on chr_3: 24660935..24662531 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3324 | g3324.t3 | TSS | g3324.t3 | 24649248 | 24649248 |
| chr_3 | g3324 | g3324.t3 | isoform | g3324.t3 | 24649424 | 24650251 |
| chr_3 | g3324 | g3324.t3 | exon | g3324.t3.exon1 | 24649424 | 24649430 |
| chr_3 | g3324 | g3324.t3 | exon | g3324.t3.exon2 | 24649493 | 24649639 |
| chr_3 | g3324 | g3324.t3 | cds | g3324.t3.CDS1 | 24649501 | 24649639 |
| chr_3 | g3324 | g3324.t3 | exon | g3324.t3.exon3 | 24649700 | 24650251 |
| chr_3 | g3324 | g3324.t3 | cds | g3324.t3.CDS2 | 24649700 | 24650250 |
| chr_3 | g3324 | g3324.t3 | TTS | g3324.t3 | 24650552 | 24650552 |
Sequences
>g3324.t3 Gene=g3324 Length=706
ATTTAAGCGCGAAAAATGTCTGCAAAAGATTTTATAAAAACACAATTGGAAGCACTCCGT
AATGCAAAGAGAAATAAGAATCCATCACAATGCTTACAAATCATTGATGTACTCTCTGAT
TATTTTGATATACCTAAATCTTCAACTGAAATAAAATATGCAATTGAATTGTTACTAAAA
GAAAATGACAAGAAAATTGACATCACAAAGTTTCTTATAACATCGATTACAACTAAAATA
TTTCATGATTGTGCCGCTAAAGTGCTCGAACTTATTCAAAAAGTGACAATTCTACATTCG
CCATTTGTGAAACCATTCACGAAGAATTTGATCGATGTATGTATTCAAATCATCAAGTGT
GCTGAACCTAGTGCTCGTTTTAAAGAGATGGCAGTAAAATCAATCGATGAAATTATAAGT
AGAGGTGCACTGATGGATGAGGAGCGTGATGAAAAAATCAAAGTATTAATTAAGACCCTT
CTTTCTGTATTCGATCAATCTCTTAAAAATAGATTATTTAACAATACATTTGAAGTCTTG
GGAAAAATTTCAAAAATGTTTCCCGATAAATTTACGCCAGAAAATGCAAGAAAATTTCTC
GATAAAATGCTTACAGTCATTCAAAATCTTTTTAAAGATGATAAAGCATCCACTTCATTA
ATTTTAGTTAGTGGTGCTGTAGATGGTTTAAAAAATCATTTAGCTA
>g3324.t3 Gene=g3324 Length=230
MSAKDFIKTQLEALRNAKRNKNPSQCLQIIDVLSDYFDIPKSSTEIKYAIELLLKENDKK
IDITKFLITSITTKIFHDCAAKVLELIQKVTILHSPFVKPFTKNLIDVCIQIIKCAEPSA
RFKEMAVKSIDEIISRGALMDEERDEKIKVLIKTLLSVFDQSLKNRLFNNTFEVLGKISK
MFPDKFTPENARKFLDKMLTVIQNLFKDDKASTSLILVSGAVDGLKNHLA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3324.t3 | ProSitePatterns | PS00331 | Malic enzymes signature. | 206 | 222 | - |
| 1 | g3324.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 22 | 211 | 2.11E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
