Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3335 g3335.t5 TSS g3335.t5 24723961 24723961
chr_3 g3335 g3335.t5 isoform g3335.t5 24724136 24726166
chr_3 g3335 g3335.t5 exon g3335.t5.exon1 24724136 24724155
chr_3 g3335 g3335.t5 cds g3335.t5.CDS1 24724136 24724155
chr_3 g3335 g3335.t5 exon g3335.t5.exon2 24725121 24725263
chr_3 g3335 g3335.t5 cds g3335.t5.CDS2 24725121 24725263
chr_3 g3335 g3335.t5 exon g3335.t5.exon3 24725319 24725466
chr_3 g3335 g3335.t5 cds g3335.t5.CDS3 24725319 24725466
chr_3 g3335 g3335.t5 exon g3335.t5.exon4 24726081 24726166
chr_3 g3335 g3335.t5 cds g3335.t5.CDS4 24726081 24726099
chr_3 g3335 g3335.t5 TTS g3335.t5 NA NA

Sequences

>g3335.t5 Gene=g3335 Length=397
ATGTCTCTTAGACTTTTAATTCGTAATGGGTCGTTTGCGCGATCATATCCAAATCTTGCA
ATATGTGGTACGACTTCTTCACCGAAAAAGTCAACACCCAATCAGCAAATTCGCTTGCAT
CATGAAGTTACAGGCGACATAATTGTTCCGTCTATGGTTATGGGAATTGATCATTTAAGA
GATCCGCGTTTAAATAAAGGTCTTGCATTTTCACTTCAAGAACGTCAGGTATTAGGCATT
CATGGTCTTCAACCAGCACGAATAAAGACTCAAGAAGAACAATTAGAGCTGTGTAAAATT
TCAATTATGAGTTTTCCAGGATCGAAATGAACGTCTATTTTTTCGTTTAGTATCAGAGAA
TGTTGAAATGATGATGCCCATCATTTATACACCAACT

>g3335.t5 Gene=g3335 Length=109
MSLRLLIRNGSFARSYPNLAICGTTSSPKKSTPNQQIRLHHEVTGDIIVPSMVMGIDHLR
DPRLNKGLAFSLQERQVLGIHGLQPARIKTQEEQLELCKISIMSFPGSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3335.t5 Gene3D G3DSA:3.30.2330.30 - 36 51 0
3 g3335.t5 Gene3D G3DSA:1.20.1370.30 - 52 104 0
1 g3335.t5 SUPERFAMILY SSF53223 Aminoacid dehydrogenase-like, N-terminal domain 37 105 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values