Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3336 g3336.t3 TTS g3336.t3 24727937 24727937
chr_3 g3336 g3336.t3 isoform g3336.t3 24728109 24728749
chr_3 g3336 g3336.t3 exon g3336.t3.exon1 24728109 24728164
chr_3 g3336 g3336.t3 cds g3336.t3.CDS1 24728109 24728164
chr_3 g3336 g3336.t3 exon g3336.t3.exon2 24728225 24728749
chr_3 g3336 g3336.t3 cds g3336.t3.CDS2 24728225 24728705
chr_3 g3336 g3336.t3 TSS g3336.t3 NA NA

Sequences

>g3336.t3 Gene=g3336 Length=581
ATGCTGATACAAAAGCAAGTGATGTTCCAAATAAGCGTCAAAAGATGAGTGAAGGGAATA
TAAGCCCTGAAGTGATTGATGAAAATCCTTTTAAAGGAGATATTGAAGACCTTGTTAATA
TTCATGGAAAGGTTTGTCCATCGACAAAGAAAAATTGTACTGGTGTTTGTGATTCGAAGG
ATAAGAAAAAGTTTGATCCATCGATAATTCCAGTTGGACAAGATTTTATGGGTGAATGTC
CAGTTTTAAATACAGCTCAGAAAGTTTCATTTTCAATTGATTGCGATCAAAAAGGCGATT
CACCTTGCACTGCCTGTCCTTTTGTTCAGAAATCTCCGGAAGAAATTCCAAAAGAAGCAA
TTGAAAAATGCCCTTTCTTCCAACAACAAAAATCTAATAAACCAGTTCAAATGATTGATT
ATGAAGAAAATGCGAAACATGATACAACTGAAAAGAAATCTCTGATTGCCGGCATGAAAG
AGATTAAGCTCTATTGCGGGCTTTTCTGTCATTCCGAACGTACTCCTAACGCTTTGGAAG
TGATGAAAATTGCTCAAGACGAAATTCATTCAAAAGCTTAA

>g3336.t3 Gene=g3336 Length=178
MSEGNISPEVIDENPFKGDIEDLVNIHGKVCPSTKKNCTGVCDSKDKKKFDPSIIPVGQD
FMGECPVLNTAQKVSFSIDCDQKGDSPCTACPFVQKSPEEIPKEAIEKCPFFQQQKSNKP
VQMIDYEENAKHDTTEKKSLIAGMKEIKLYCGLFCHSERTPNALEVMKIAQDEIHSKA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g3336.t3 Coils Coil Coil 167 178 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed