Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein-serine O-palmitoleoyltransferase porcupine.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3346 g3346.t5 TSS g3346.t5 24764662 24764662
chr_3 g3346 g3346.t5 isoform g3346.t5 24765474 24766514
chr_3 g3346 g3346.t5 exon g3346.t5.exon1 24765474 24765685
chr_3 g3346 g3346.t5 cds g3346.t5.CDS1 24765501 24765685
chr_3 g3346 g3346.t5 exon g3346.t5.exon2 24765762 24765988
chr_3 g3346 g3346.t5 cds g3346.t5.CDS2 24765762 24765988
chr_3 g3346 g3346.t5 exon g3346.t5.exon3 24766057 24766514
chr_3 g3346 g3346.t5 cds g3346.t5.CDS3 24766057 24766514
chr_3 g3346 g3346.t5 TTS g3346.t5 24766813 24766813

Sequences

>g3346.t5 Gene=g3346 Length=897
CCTTCGATTTATGAATATACCGGCTACATGCTTTGTCCTGCAAATCTCGTGCTTGGGCCT
TTTGTTTCATTTCTCACTTATAAACATATGGCAAAAGGAATGCGCTTTTCGATACGACAC
TTTCTTCATGTGCTAGTGAATAGCTTTTTATCGATTGTGTTCATATTCCTATCTGCATGC
TTCCTCAACTATCTTATTGCTGATGATGCCAGATTCATCGTGACATATAGAGATGCATTT
ATTTTTCGATGCAGTCATTACTTTGTATCGTTCATGTCTGCTGCGGCATTATTGACGTCA
GGTATAGAAAGTAAAGATCGTGCATCGTCAGATATTTTTGGGTATCAAATCACACGACCA
CTTGATATCGAGTTACCTCGCTCGCTTGTACCTGTAGTGATTTCGTGGAACATTCCGATT
CACTTGTGGATAAAAAATTATGTCTTTGAGAATTTAAAGCGTTACGGAAAATTTAAAGCA
ATTGTTTTGACATACTTAATATCATCATCACTTCATGGATTACAAATTCAGTTGGCTGCA
GTATTATTGTCGATTGGAATTTTTTCGTATGTCGAATTTCGATTACGCAACTTACTTGCA
GAAATTTTAGACGCCTGTGTAAATGCAAACAAGTGCGTATTGGATGAAAAAGGTTGCTGC
ATCACGAAGGGACATGAATACACCACACGACATTTTTGGGTGAAGCTGATAAATTTTACA
TTTGGAATCTTCACAGTAGTTCTCCTTGCCTATCTCGGTGTTCTACTCGACACATCCGTT
GACAATCAAAATCAATTTTCATTTTATAGTAATTTAAAAAAATGGTATGATCTTAATTTC
TTTGGCCATATAATTGTTTTAATTTGGTACATGATGTACTTAATAGCAAAAAATTAA

>g3346.t5 Gene=g3346 Length=289
MLCPANLVLGPFVSFLTYKHMAKGMRFSIRHFLHVLVNSFLSIVFIFLSACFLNYLIADD
ARFIVTYRDAFIFRCSHYFVSFMSAAALLTSGIESKDRASSDIFGYQITRPLDIELPRSL
VPVVISWNIPIHLWIKNYVFENLKRYGKFKAIVLTYLISSSLHGLQIQLAAVLLSIGIFS
YVEFRLRNLLAEILDACVNANKCVLDEKGCCITKGHEYTTRHFWVKLINFTFGIFTVVLL
AYLGVLLDTSVDNQNQFSFYSNLKKWYDLNFFGHIIVLIWYMMYLIAKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3346.t5 PANTHER PTHR13906:SF12 PROTEIN-SERINE O-PALMITOLEOYLTRANSFERASE PORCUPINE 2 285 6.1E-69
3 g3346.t5 PANTHER PTHR13906 PORCUPINE 2 285 6.1E-69
1 g3346.t5 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 3 175 7.4E-10
12 g3346.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
20 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 57 -
15 g3346.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 58 76 -
19 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 77 95 -
11 g3346.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 96 115 -
17 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 135 -
14 g3346.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 136 154 -
16 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 155 182 -
10 g3346.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 183 226 -
18 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 227 247 -
13 g3346.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 248 266 -
21 g3346.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 267 287 -
9 g3346.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 288 289 -
8 g3346.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 35 57 -
5 g3346.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -
7 g3346.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 162 184 -
4 g3346.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 223 245 -
6 g3346.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 265 287 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values