Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein-serine O-palmitoleoyltransferase porcupine.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3346 g3346.t6 isoform g3346.t6 24765762 24766514
chr_3 g3346 g3346.t6 exon g3346.t6.exon1 24765762 24765988
chr_3 g3346 g3346.t6 cds g3346.t6.CDS1 24765823 24765988
chr_3 g3346 g3346.t6 exon g3346.t6.exon2 24766057 24766514
chr_3 g3346 g3346.t6 cds g3346.t6.CDS2 24766057 24766514
chr_3 g3346 g3346.t6 TTS g3346.t6 24766813 24766813
chr_3 g3346 g3346.t6 TSS g3346.t6 NA NA

Sequences

>g3346.t6 Gene=g3346 Length=685
ATTCATCGTGACATATAGAGATGCATTTATTTTTCGATGCAGTCATTACTTTGTATCGTT
CATGTCTGCTGCGGCATTATTGACGTCAGGTATAGAAAGTAAAGATCGTGCATCGTCAGA
TATTTTTGGGTATCAAATCACACGACCACTTGATATCGAGTTACCTCGCTCGCTTGTACC
TGTAGTGATTTCGTGGAACATTCCGATTCACTTGTGGATAAAAAATTATGTCTTTGAGAA
TTTAAAGCGTTACGGAAAATTTAAAGCAATTGTTTTGACATACTTAATATCATCATCACT
TCATGGATTACAAATTCAGTTGGCTGCAGTATTATTGTCGATTGGAATTTTTTCGTATGT
CGAATTTCGATTACGCAACTTACTTGCAGAAATTTTAGACGCCTGTGTAAATGCAAACAA
GTGCGTATTGGATGAAAAAGGTTGCTGCATCACGAAGGGACATGAATACACCACACGACA
TTTTTGGGTGAAGCTGATAAATTTTACATTTGGAATCTTCACAGTAGTTCTCCTTGCCTA
TCTCGGTGTTCTACTCGACACATCCGTTGACAATCAAAATCAATTTTCATTTTATAGTAA
TTTAAAAAAATGGTATGATCTTAATTTCTTTGGCCATATAATTGTTTTAATTTGGTACAT
GATGTACTTAATAGCAAAAAATTAA

>g3346.t6 Gene=g3346 Length=207
MSAAALLTSGIESKDRASSDIFGYQITRPLDIELPRSLVPVVISWNIPIHLWIKNYVFEN
LKRYGKFKAIVLTYLISSSLHGLQIQLAAVLLSIGIFSYVEFRLRNLLAEILDACVNANK
CVLDEKGCCITKGHEYTTRHFWVKLINFTFGIFTVVLLAYLGVLLDTSVDNQNQFSFYSN
LKKWYDLNFFGHIIVLIWYMMYLIAKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3346.t6 PANTHER PTHR13906:SF12 PROTEIN-SERINE O-PALMITOLEOYLTRANSFERASE PORCUPINE 2 203 6.1E-46
3 g3346.t6 PANTHER PTHR13906 PORCUPINE 2 203 6.1E-46
1 g3346.t6 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 25 93 6.5E-9
12 g3346.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 13 -
13 g3346.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
14 g3346.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 8 -
19 g3346.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 9 13 -
10 g3346.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 14 36 -
16 g3346.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 37 57 -
8 g3346.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 58 68 -
17 g3346.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 69 100 -
9 g3346.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 101 144 -
15 g3346.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 145 165 -
7 g3346.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 166 184 -
18 g3346.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 185 205 -
11 g3346.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 206 207 -
6 g3346.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 80 102 -
5 g3346.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 141 163 -
4 g3346.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 183 205 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values