General information for g3357.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DmX-like protein 1.
Parent gene
- The parent gene g3357 is located on chr_3: 24829178..24830260 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3357 | g3357.t1 | TSS | g3357.t1 | 24815855 | 24815855 |
| chr_3 | g3357 | g3357.t1 | isoform | g3357.t1 | 24815952 | 24829178 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon1 | 24815952 | 24816038 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS1 | 24815952 | 24816038 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon2 | 24816706 | 24817273 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS2 | 24816706 | 24817273 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon3 | 24817338 | 24821683 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS3 | 24817338 | 24821683 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon4 | 24822242 | 24822331 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS4 | 24822242 | 24822331 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon5 | 24822624 | 24822743 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS5 | 24822624 | 24822743 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon6 | 24822804 | 24827128 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS6 | 24822804 | 24827128 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon7 | 24827190 | 24827289 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS7 | 24827190 | 24827289 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon8 | 24827953 | 24828109 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS8 | 24827953 | 24828109 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon9 | 24828180 | 24828292 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS9 | 24828180 | 24828292 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon10 | 24828353 | 24828422 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS10 | 24828353 | 24828422 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon11 | 24828476 | 24828550 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS11 | 24828476 | 24828550 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon12 | 24828618 | 24828751 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS12 | 24828618 | 24828751 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon13 | 24828823 | 24828906 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS13 | 24828823 | 24828906 |
| chr_3 | g3357 | g3357.t1 | exon | g3357.t1.exon14 | 24828972 | 24829178 |
| chr_3 | g3357 | g3357.t1 | cds | g3357.t1.CDS14 | 24828972 | 24829178 |
| chr_3 | g3357 | g3357.t1 | TTS | g3357.t1 | 24830191 | 24830191 |
Sequences
>g3357.t1 Gene=g3357 Length=10476
ATGAATTGTCATCAAATATTAAGTGGAGCATGCAATGCTGGTGATCGTTGTTTTGCAGTT
GGATCAGTTGAAGGAGTGTCTTTCACAGCATATGCAGCGGGCTGTAATATTGTGGTACTT
GCAAGTACATTCGAACGTGTACAGATAATTCCTGGAGCAACTCATAATTATATAAGAATA
TCAGCATTAGATTGTAGTACAGACACTGGAAAAATTGCAGCCGCTTATGAGGACAAAGTG
TGTATTTTTGAACCAACACCATTGATTCATTCTTCTCATCCACCGGCACACGGTCTTGAA
TATAAATGGGTGCAAACTGGAACATTACAAGCTTCATCACATATAAGCTCATTATCATGG
AATTTAGAAGGCACAAGATTACTTACAGGAGGAACAGTGCTAGAGTTATGGCATGAAAAA
ATTAAACAGGAAGATGAAAATGAGCCAGTTAAATTTGAAATTGGAGGTGCTGATCCGAAA
ACACCGACAAATGAACAAGATAATGATATACAACAAGAAGAAAGTTGGGAATGTGTATGG
AAGTGTCATACAGCATCACCAGTTCATCATATGGCATTTAGTCCCGATGGCACTCTTTTT
GCAACATCAGGGAAAAGTGATCGTTTAGTCAAAGTGTGGTATGAAAACAAACACTTGTTA
TTTCCAACAAAAAGTCTTGAGCACAATCAATCGATGGGGAGTTTCATTGGCAATCCATTT
GAATTGAATTATGGTTTTGTTTATGTAGCTCATCCACGAGCAGTTACACATATTTCTTGG
AGAAAAACTAGCAAATATATGCCAAAAGGTTCGGTTTCTAATATGCTCGTTACATCATGT
CTAGACAATATTTGTCGTGTATGGGTTGAAACAGTTTTGCCCGATGATGGGCTCGTTAAT
ATGAGTCAATTTGATCCATTGGCATCACAAAATCCCAAATTTCGAACACATCGTCATAAA
CATCGATTTATGCAGCGACTTAAACACATGAAAACTTGTTTTCACATTAGAAGACATGCT
AAACATCAAGCAGCATCAGGATTGTCAGGAATGGGAGCAGGATTTGGTGGAATGGGCGCA
AATAATGGATTTGGTCAATCACCTATTCCGACTTTGCCTTCAACTTATAGTGTCCATGAC
TTTCATTCATATGGCTATCATGGTACAGGTGTGACTGCAGGATTACATTTTCACCTTGCT
GCTAGTATTAATGCAGAAACTGACATTCCATTGGTTCCATCAATGCAAACAAATGATCCA
TCAACACAGCCAAACTTTATTTTGCATTGGTTGAACAACAAAGAAATGCATTTCTCTTTG
CAAGCTGAAGCTCTTATGCATGAAATGGCAAAGAAATTGATTGAAAAAGAAGACGTTAAT
AATCTCGCGAGTGCTGCAGAAAACAGCCATTCTGAGCATTCCGATGAAAATTTACAAGCT
GATGAGATTAAAAAGAAATTAAGTAAAATGAATAAGTCAATGTCGCATGAAGATAGTCAA
CACAGTGATGGAGATTTACATTATCAACAACAATTACAGCAGCAACAGCATGCAACACGT
TCACATTCAATTGGAAATGCTTCACAAGCAATCCCACCTTCACATACACTATCAAATACC
ACATCAATTCAATCATTATTGACTGATGGTCAAACTGGTGGACAAGGAGCTGCAAATGTT
CATTCAGCTGGCACAGATTCACTCGATATGAAAATTGAAGGACTTTTAAAAGATTGGCAT
CACAGTCCCGATTTACTGTTTTCAATTCATCCAATTGATGGAAGTTTTCTAATATGGGTT
GTTGAATATCTTGATGAATATCAACCAAGTTCATTCAGACAAGCACAAGTTTCATTCTCA
ACACGTATTCCTTCAGCATTTCCACTTGGCGATGCCATGTCAATGTCGACTACAGTTAGT
CTCTATTCGAGTGCTATCAATTTCCCCAATTTTCGTGATATTGTCATAAAAAGTGTAAAA
GGTTCAACTAATTTATCAACAGGAAAAGAAAATTCTTCCAAAGAAAATATTGATGGCAGT
GAAACACAATTGCCAAGCGTACAAGAAGAACAAGATGCAGATTCACATCATGAAGTAGAA
AATAAGGGTGATGATGAAGATCAAGATGAGAATGCTGACAATAAATCAAATAAGACGACA
GTAGATAAAAATTCATCAGCTAATGATTCAGGAAATATCAATGATTCACATAGTAGCGAT
TTATTGATTGCTCCTCCTTCACCAACTATATCAATGGTCACAAAGCATGCAAATGGAACC
CTTAATCTTTGGCAACTGACATTTGCTGACAAGAGCAAATTTTCTCAAGTTTTAAGTATT
GGTCATGCATCTCGAGCAAGTGGACATCGATTTAGAGTTAATGATATAACTTGTCATCCA
GTTTTACCTTTGCTTTTGACTACATCACATCACAACATTCCAGAAGTGACTAATAATGAG
AATGATGAAAATGCTTCAGCTCAACGTTTTACAGCTGATAAATTGATACGAGGCAAAGAT
GTTTGTGTACCATCAGGTTTCTGTTCTGAATTGATTTTATGGAGAGTTGATGCTGTTGGT
CCCTTATCACAATCAGGTGGTGTCAGTGAGTTAGCAAGAATCAATTCACCCGAAATTTCT
GCATTTAGTAATGTCGCATGGATTCCTACATTATTGCCAAGCACAACATTAGGAAGTCTT
TCAAATTCACCTTCAGCATGTTTTGTTGCAAGTGATGGTGAATCATTAAGAGTATATCAA
GCTGTAATTGATGCTAGAACGTTATTAGCTGAAATTTCTAGCTCAGAAAGACGACATCGA
ATGATGGACTCAATGATGTCTTTATCAGAATGTTCTTCAATCAACGATGGAATTTTGCAA
CATCAATCACCATTACATGATAAAATTAAAATTGTTTCGCAACAATCAACAGCTCGTCCC
GGATGTATAATTCAATTGGATGCTATTGCTGATGCAACTCACGATTGGCAAAATACTCAA
CTTTTGCACGTTTTTCAAGAACAATTGGTCACTAGAGAACGAGGCGATTCTATGGACACG
AGTGGAATGCCAATTAAAGAAAATTTTGGCTATGATATGGCAGAGTCTGTTAATGGATTA
ATGGATAAAGAATTGGATGCTATGGTTGATTTGCAGAGAAATTCAGTATTTGAAGAGCCA
TTTTACATTGTCGTTTTAGAAAGAACTCAAAAAGGTACAACTATACACATGTGGCGAATT
GTAATTGCATCACAGCCAATACAAGCTGATGAATTATCGAGTAGCATGATGTACGTGCCA
GACAGTAATATTGTACAAGATCTAGACGATAACGAAGAGCATCAACGACAAGGACGACCG
TCGACAGCAGGATTAATCGATGACAATCAAAAAGACCTAATGAGTGGAATCAACGACTAT
TGTCCTCGTGTAAATATTTCCACAACTAAAGTTTGCACACAAGAACTTCCATTACCCGAT
GGAGTTGATGTTGTTCATGCTGCACCTGCTGCCGGTCATCTTAGTTCATCTTCAATCTAT
CCAGCTTGTTTTGCTCCATACATCATTGTGACAGCTTGTTCTGATTCAAATGTAAGATTT
TGGAAATGTCAAGTAACAAAAAAGTCAGGCAGCAATAATGTATCAAAGTTTAAATATGAA
TGGTGTGAGTGGGAAATGATTCGAAAAGATCAAGAATCATCGATAGACGTTAATGGACAA
TTGCTTCATATTAGTGCTGCCTACAGTGGAAGAATTGCATGTGCTTACAAATATGGAAAA
TCATTCACACGTCCAACAAAAGCTGATCCTGAATCGCGATATGTAAACTTATGTGTTGCA
ATTTATGAATGTGAGAGTACTGGAGGAAGTGAATGGATTTTAGAGGACACGATTCATTTG
AAAAACATACATTTACCGATAATTCAAGTTGATCCACATTTGGATTTAAGTTATCTCTAT
GATCAAAAGTCACTTGCAAAGAAACAGAGATTACAGCAAGTTTTACATCCATTTTCGACG
AATGATGATTTAGTAAGAACACCTGGAAGAAATCAAAATAATTTCAATAATGGCGATGTT
ACACCTGAGTTAAAACCGCCTGGAAATGGACTGTTAGCTGTTCCTAGTTTCAGTACATTG
CAAAGTTTGAGAAAATCAATAACAGAACATGGTAATACATGTCCATTAACACAAAAACAT
CTCGTACAACTTGATTGGATATCCAAAGAAGATGGTTCACATATATTGACTGTTGCTGTT
GGTAGTAAAATTATGCTCTATACGCCTGTATCAAGTGATGTCGCTCAAGCAAATATGAAA
GCAATGAAAGAGAGTCAAACTGCAAATAGACCTCTTTTAAGAAAAGCAAGTTCACTGGCT
AGACCACATTTTAATGACGAAATTCGTTGGATGAAATTAAGACAAATCGAATTAAAGACA
GCTGATGGTTTACCGCCACTTCCAATGCAAATTTCTTGGGTAAGAGATGGTATTTTTGTC
GTTGGAATGGATTCAGAAATGCACGTATATTCACAATGGAAACCTAGAGGATATGAACAA
ATATTGCTACATCATCTTGAGAATTTAGATAATTTCCATGATACAAGATTGTTGAAGGAT
GAAGATTTGCGTTCATTAGCAACTGAAAGTAATCAGAGACTTTTAGCGACAGTATCATCA
ATGCCACATTTATCGCGAGTTAGTGCAAATAATTTGCCATTGTTTGGTGCACAAGAGAAG
AAAAAGAAAAGTGGTCAATCACCAAATCAACCTCAACAAGAAATGGTCGTAAATCATGAT
TATATGAATGATTTTGGTCTTTTTGAGGCATCCCGAATTGCATGTCCAGTTTTACCACAA
TATCATCCGAAACAATTAATGGAACTTCTTAATTCAGGAAAAATTCGCTGGGTAAAAGCT
ATTCTTGCACATCTCGTTCGTTGCATCAGTGGATCATGTGCTGTGCGTAATAACAATGAT
GAAGAAAGTTTAAATAGACAGCGTGGTTGGTCCAGATCACGCACACTCTCTGTGAGCTAT
CCAGCTGGCACATCTTCTAGTCCTTTAGAACCACGTGGTTCAACTACACAGATTCCAGAA
GAGCTGACTCTAGATTATGCTGAAATTACTTCAATTCCTCCTTTACCATTATGGACTTTA
TTGGCTGCTGATAAAGAAAATATTAATCAACAACAGAAAGAAGAAGTCAAGGATTATAAT
GAGCTATTTGATAGCAATGTAACAGAAGATAATTTAGATGACTTATTGGATGAAGACCTC
GATTCAACACGTCGATTTGATCGTCGTTCATCGATTCCTGAGAGGCAGTATTTGTCGCAT
TTCGGTCCACGTCAAGGACAACTTCTTTCGCGTTTATTGACACACACGCATCTTCCTGGT
TTATCAAGTTTGGATCAAATGCATCTCCTCGCTCTTGCTGATACAGTTTCAACATGCAAT
ACAGACTTTGCGGAAAGATTTGCTATTGATGCTGCAAAAACTGCAATAGCTAAAGAAAAT
CTTACTGGAAATGCAAATGACAGTCAAAATATTTCAACTGATTCACTTGACGATTGTGGA
CTACGATTTTTAATGGCAATGAAACATTTCAATTATTTGATTCGATGTTTGCCTCTTGCA
CAACGTAATCAATTTCAAAAGCAAGGTGTTGGCACATCAAATATCGTTTGGGCATTTCAT
TCTGAAAGTGAAGAAGAATTATTAAATTTAATTCCTAACTATTCAAAAGGACAAGTAAAA
TGGACACAATTGAGAGAACTTGGAGTTGGATGGTGGTTAAGAAATCAAACTTTACTTAAA
ACATGTGTTGAAAAATTGGCAAAATCAGCTTTTCAACAGAAACAAGATCCACTTGATGCT
GCTCTTTATTACATTGCTATGAAAAAGAAGTCTGTTGTCTGGGGATTGTTTAAACAACTT
AGAGATGAAAAGATGACTGCTTTCTTTGCTAACAACTTCAACGAAGATCGATGGAGAAAA
GCTGCACTTAAAAATGCATTTGCTTTATTAGGAAAACAAAGGTTTGAACATGCAGTTGCT
TTCTTCCTTCTTGCTGGCAGTTTAAATGATGCTCTTGAAGTATGTTTAACAAAATTGGAT
GATTTACAATTGGCATTAATCATAACGAGACTTTATGAAGGAGAACACGATAGTGCACCA
CCAAGTTATAAGAAACTTCTTTTCGAAGAAATTCTTGGATGCGATAAAAATGGTGAAAAT
CAAGACATCGATCGAGCACATCCTGATCCATTCTTGCGTTCAATGTCATTGTGGATTCTT
AAAGATTATAGCGGTTCATTATCAACTTTATTGCAAAATGGTGTTGGTATTCTCCATAAA
GCTTACGATGATGAAGATCCTTTATTAAATCCAGATCATGGCACGAATTCAAATTCAACC
ACAGCTAATCCAAATGTTTTCAATTTTTATGTTTATTTGCGCACTCATCCATTAATCATT
CGTCAACATATTGCAAATACAGCTCAAGAAAAGAAAAAAGCACAAGTTGTTTTAAGTGGC
TTCAGTTACGGATCAGTTGGTGGTTTATCGAGAACTGATAGTATTTCTACTATGGGACAA
AATGCAAAAATCAAATCAAGCACTTTAGCAACAGACAAGCAGCTACATTTAGAAGATTCT
ATAACTCCATTAGAACGACAACTTTACTTTACAACAGCACACGGACATTTCAAAGCAGGC
TGTCCTGCATTGGCATTAGAAGTATTGAGCAAACTACCCACCAAAGTAATTGACACAGAT
GTAAATGAAAGTGATGACAATACGAGTGTAACAACTGATAAAAAGGATGTTACTACAAAT
CTCATTGAGACTGGCACATTTGATTGGAGTCAACCAGTAGATAGCAGTAGTGGTCTTGAT
TCTGCATCGAGTTTCGATTGGGGTGCACCTGTTTCACAGCCCATTGATGAAGGCTTTAAA
ATTGTATGGGATGAAGATGAACCAGCTGATGACGAGAGTGATGATGGACTTGGAATGAAA
ATTGATAAGAAAGACACATCGAAAGATCCAGACAATACCAAAGTAACTACAGAAACTAGT
GATAATCTTAATTCTAACCATAATATTGATAAGGATAAGCAAGGACAATTGGATATCATG
GCACAGCAACTTAAATTTATTGCATGTCTTAAAATTTTAATGGAAGAGTTATCAACATTG
GCCACTGGATTTGAAGTTGATGGTGGACAACTACGCTATCAATTATATGTGTGGCTTGAG
CGTGAAGTTGAAGCATTGAAACAATTGTGCAATTACAGTACTAGTGATAGTGGTGATAGT
GCGAATGTTACATTAGAAGATACAGCAGTTGAAAGTCAGCAAGATACACCTCTTATGAGT
AACAAATTTCAACATAACGATCGTCCAACTTTACATGAAATACTTTTACAAGAAAAATGT
GATTTTGAAGCGAAAGTAGCAAGAGCAGCAAAACGAAAACGTTGGTTGAAAGCTAATGAA
ACGCTTTTACGTACATTATTGAGTTATTGCTCATTGCATGGTGCAAGTGGTGGAGGTTTA
GCATCAGTTCGAATGGAATTGATTTTATTACTCCAAGAATTACAACAAGAAAAAACGCAA
CAGCAACTTTTGAGCCCACTTCCATTCCCAACAACATTGCCACTATTGAGTGCTTGCGTC
GCTGGAAATAAAACTGTTATAGCCGATCCAATTCGATATCTTCAACAGCAAACTCATGAT
ATGCTTCAAACTGTTGTTGAACTAAGAGGCCCACCGATTGGCATTAATGATCCACAAACG
TCTGATGTTTTTATTTTAAGAGATCTTGCTGTTGCATTGTCTGCTTGCATTTATCAATCT
TTATGCGATTCAGATACATTTAGCGTTAAACAATTGACTGCAAATGAATGTCACAGTCCA
GGCATGGAAACAATTGCAAAATTAAATGCAAGTTGTCAAAGTACACATTTAATGGCAAAT
GCGGCTGCTCATACAAGAAGAAGAAAGTATTCAACTGATGAACCAGTTGCTGTTTCAACA
CCACCAGCAAAATGGCCAGGCGTGACAAATTTACGAGCTTTGCTTGCACGTGAAAAGGAT
GAAGACACACCTAGACTTAATGTTTTACTTTGTGAAGTTTTTGTTGCTTCATTTATGTCA
TTGTTGGTTTATGCATTATCAACCTGTGAATGTCATATTCTATACAGACTTGTTGGTCAA
AAGTTTACTGAATCAACATGGGCATTGCTATATGGAGGAGGTGTGAAAAAATTATTAAGA
AAAGCTACATCACATGTTCAAGCTGCTCAGCAAATGGTTCAACAACAAATTCAGCAACAA
CAAAGTAATGAAAGCGCAGAAGGTACAAACACTGAGAGTGGAATGTGGGGTGCTGTGACT
TCAATCACAAAGCATCGAGTAAAAATGAATTTAAAAATTTTGGGTCAGTTAGGTAGTCAA
CAAAGTTCAACAAATATGAAGGAAGATAAACCAACATATCGTGAACAATTTGTGCCACCT
GAAATGTCAATGGTCAGTTATTTCCTGACAAAACCATCACTTAGTGGAGATAAATATGAA
GATGATTATGATTCAGCTGATTCTGCAGTTTCTGATCTTGATGATGATGACGACGATGAA
GATGTTTTCGCTGATCCATTAACTAATGATCCGAAAAAACTTCAAACTGCAGCTGCAATT
AAAAAACATAAAAAAGAAAACACAGAGCACACAAATCCGAATTCACTTTCATGGTGCATT
TTAAGATTGGCAATCATAAAACATATACAAAATCAATTGCATTCTTTCATTAACATTGCT
GGTTTGGAATTACAAGAACTTCCAGTTTGTAGTCCATTAATTCATGGTACATTAAGAAGT
TTAGCAATTTGGCAAGATTTATTAAAAGAAGAACTTGAAGCAAGAGGACCAGCATCAGCT
GATTTTATTCCAGGCTGCTTTGTAGAAGATGATACGAAAGGTCCATCAATTCAGAAGTAT
AGAACTCTATTAGAGAAAAATAACACACCATTCAGTCCAGCAGCATCGTCAGCTGCACCG
TGTCGTCGTTTATGGAATTATATGGTGAGACAAGAGGCATGTCAAGATGTCTTTATTCGT
GCAATATTTGGAAAGAGAAAGACATTCACATTTGATCAGCCAACAATAGTTTCACAAGGT
GCTGTTGCTCCTTCAGTATCAAATTCAGTTGTTGATTTTTCACAACATAGTGATGTTGGC
ATTAATTTATCAGCCAATGCAAATAAAGAACAAAGTCAATCACAACTTATTGAGCCTGTG
CGAATTATTCACAAAGATCAGGAATCAATTTCTGCATTCTGCATTAATCTAACAAGCTCA
GGAATGATGGCTTTAGCAACACCGAAAGAACTTCAAGAAATTGATATTTCTTTGCTGCTA
GAATCTCCAAATTGGCTAGAGGATGAGTGTGAGTTTGACATATTGAATTTGACAAAAGAT
GTAGACACACTTCCAGCGAGTGGCTTTCTTGTTATTCAAGCTTCTAGTGCTGATAAAGCC
GCAGCACAAAATCAAGTACAGAATTTGCAGCAAGCACCATTACCAGTTAGTCCACAGCCA
GGAGCAACACCTCAATCAGGCAGAGGTGCTTCTGTGGTATTGAAACATAAAATCGACAAT
ATTAAACGTATGAGTGCACATCCATTAATGCCACTTTATTTAACTGGCGCGCAAGATGGA
TCAGTTCAAATGTGGGAGTGGGGTCATCAACAAGCTGTTTGCACGCCTCGTCCACCGGGA
ACATTTGCAAAAGTCACGCGATGTCGTTTTTCACAACACGGTAATAAATTTGGCATTGCG
GATGGAGATGGAAAATTAAGCTTATGGCAAGTTGGTCTTGCGTCACAAACAAATAGGTCA
TTCTTTTCATATGAATGCCATAATAAACTCATAACAGATTTTGTGTTTCTTGGATCATGC
AGTTTGGTTGCAACAGCCGGTCATAGTTCTGAAAGTAAAAATGTTGCAATGTGGGATACA
TTATTGCCACAAAAGAAAGCAATGGTATCATCTTTCGCATGTCATGATCAAGGTGCTTCT
AGTTTAGCATATGCACCACAACATCAATTATTAATTTCAGCTGGTAAAAAAGGTGATGTT
TGCATATTTGATGTGCGACAAAGAACGCTAAGACATCGATTCCAGGCTCATGATAATGCA
ATTAAATGTTTGGCAATCGATCCACATGAAGAAATTTTTGTTACTGGTGATTCAAATGGA
GACATTAAGGTATGGGCTTTACCAGCGCCGATTAATACGCCATTATTTTATTATCCTGGC
GAACATAAGCATAGCAGCTTTTTCAAGCATACCGGTCAAGGAGTAACACAAATCTACATT
GATCAAGTCGGTAGAATGTTTTCATGTGGTGCTGACGGTTCAATGAAGATTCGATCGTTG
CCGGATCGTGATATGATCGTAAATGCAATTTATTAG
>g3357.t1 Gene=g3357 Length=3491
MNCHQILSGACNAGDRCFAVGSVEGVSFTAYAAGCNIVVLASTFERVQIIPGATHNYIRI
SALDCSTDTGKIAAAYEDKVCIFEPTPLIHSSHPPAHGLEYKWVQTGTLQASSHISSLSW
NLEGTRLLTGGTVLELWHEKIKQEDENEPVKFEIGGADPKTPTNEQDNDIQQEESWECVW
KCHTASPVHHMAFSPDGTLFATSGKSDRLVKVWYENKHLLFPTKSLEHNQSMGSFIGNPF
ELNYGFVYVAHPRAVTHISWRKTSKYMPKGSVSNMLVTSCLDNICRVWVETVLPDDGLVN
MSQFDPLASQNPKFRTHRHKHRFMQRLKHMKTCFHIRRHAKHQAASGLSGMGAGFGGMGA
NNGFGQSPIPTLPSTYSVHDFHSYGYHGTGVTAGLHFHLAASINAETDIPLVPSMQTNDP
STQPNFILHWLNNKEMHFSLQAEALMHEMAKKLIEKEDVNNLASAAENSHSEHSDENLQA
DEIKKKLSKMNKSMSHEDSQHSDGDLHYQQQLQQQQHATRSHSIGNASQAIPPSHTLSNT
TSIQSLLTDGQTGGQGAANVHSAGTDSLDMKIEGLLKDWHHSPDLLFSIHPIDGSFLIWV
VEYLDEYQPSSFRQAQVSFSTRIPSAFPLGDAMSMSTTVSLYSSAINFPNFRDIVIKSVK
GSTNLSTGKENSSKENIDGSETQLPSVQEEQDADSHHEVENKGDDEDQDENADNKSNKTT
VDKNSSANDSGNINDSHSSDLLIAPPSPTISMVTKHANGTLNLWQLTFADKSKFSQVLSI
GHASRASGHRFRVNDITCHPVLPLLLTTSHHNIPEVTNNENDENASAQRFTADKLIRGKD
VCVPSGFCSELILWRVDAVGPLSQSGGVSELARINSPEISAFSNVAWIPTLLPSTTLGSL
SNSPSACFVASDGESLRVYQAVIDARTLLAEISSSERRHRMMDSMMSLSECSSINDGILQ
HQSPLHDKIKIVSQQSTARPGCIIQLDAIADATHDWQNTQLLHVFQEQLVTRERGDSMDT
SGMPIKENFGYDMAESVNGLMDKELDAMVDLQRNSVFEEPFYIVVLERTQKGTTIHMWRI
VIASQPIQADELSSSMMYVPDSNIVQDLDDNEEHQRQGRPSTAGLIDDNQKDLMSGINDY
CPRVNISTTKVCTQELPLPDGVDVVHAAPAAGHLSSSSIYPACFAPYIIVTACSDSNVRF
WKCQVTKKSGSNNVSKFKYEWCEWEMIRKDQESSIDVNGQLLHISAAYSGRIACAYKYGK
SFTRPTKADPESRYVNLCVAIYECESTGGSEWILEDTIHLKNIHLPIIQVDPHLDLSYLY
DQKSLAKKQRLQQVLHPFSTNDDLVRTPGRNQNNFNNGDVTPELKPPGNGLLAVPSFSTL
QSLRKSITEHGNTCPLTQKHLVQLDWISKEDGSHILTVAVGSKIMLYTPVSSDVAQANMK
AMKESQTANRPLLRKASSLARPHFNDEIRWMKLRQIELKTADGLPPLPMQISWVRDGIFV
VGMDSEMHVYSQWKPRGYEQILLHHLENLDNFHDTRLLKDEDLRSLATESNQRLLATVSS
MPHLSRVSANNLPLFGAQEKKKKSGQSPNQPQQEMVVNHDYMNDFGLFEASRIACPVLPQ
YHPKQLMELLNSGKIRWVKAILAHLVRCISGSCAVRNNNDEESLNRQRGWSRSRTLSVSY
PAGTSSSPLEPRGSTTQIPEELTLDYAEITSIPPLPLWTLLAADKENINQQQKEEVKDYN
ELFDSNVTEDNLDDLLDEDLDSTRRFDRRSSIPERQYLSHFGPRQGQLLSRLLTHTHLPG
LSSLDQMHLLALADTVSTCNTDFAERFAIDAAKTAIAKENLTGNANDSQNISTDSLDDCG
LRFLMAMKHFNYLIRCLPLAQRNQFQKQGVGTSNIVWAFHSESEEELLNLIPNYSKGQVK
WTQLRELGVGWWLRNQTLLKTCVEKLAKSAFQQKQDPLDAALYYIAMKKKSVVWGLFKQL
RDEKMTAFFANNFNEDRWRKAALKNAFALLGKQRFEHAVAFFLLAGSLNDALEVCLTKLD
DLQLALIITRLYEGEHDSAPPSYKKLLFEEILGCDKNGENQDIDRAHPDPFLRSMSLWIL
KDYSGSLSTLLQNGVGILHKAYDDEDPLLNPDHGTNSNSTTANPNVFNFYVYLRTHPLII
RQHIANTAQEKKKAQVVLSGFSYGSVGGLSRTDSISTMGQNAKIKSSTLATDKQLHLEDS
ITPLERQLYFTTAHGHFKAGCPALALEVLSKLPTKVIDTDVNESDDNTSVTTDKKDVTTN
LIETGTFDWSQPVDSSSGLDSASSFDWGAPVSQPIDEGFKIVWDEDEPADDESDDGLGMK
IDKKDTSKDPDNTKVTTETSDNLNSNHNIDKDKQGQLDIMAQQLKFIACLKILMEELSTL
ATGFEVDGGQLRYQLYVWLEREVEALKQLCNYSTSDSGDSANVTLEDTAVESQQDTPLMS
NKFQHNDRPTLHEILLQEKCDFEAKVARAAKRKRWLKANETLLRTLLSYCSLHGASGGGL
ASVRMELILLLQELQQEKTQQQLLSPLPFPTTLPLLSACVAGNKTVIADPIRYLQQQTHD
MLQTVVELRGPPIGINDPQTSDVFILRDLAVALSACIYQSLCDSDTFSVKQLTANECHSP
GMETIAKLNASCQSTHLMANAAAHTRRRKYSTDEPVAVSTPPAKWPGVTNLRALLAREKD
EDTPRLNVLLCEVFVASFMSLLVYALSTCECHILYRLVGQKFTESTWALLYGGGVKKLLR
KATSHVQAAQQMVQQQIQQQQSNESAEGTNTESGMWGAVTSITKHRVKMNLKILGQLGSQ
QSSTNMKEDKPTYREQFVPPEMSMVSYFLTKPSLSGDKYEDDYDSADSAVSDLDDDDDDE
DVFADPLTNDPKKLQTAAAIKKHKKENTEHTNPNSLSWCILRLAIIKHIQNQLHSFINIA
GLELQELPVCSPLIHGTLRSLAIWQDLLKEELEARGPASADFIPGCFVEDDTKGPSIQKY
RTLLEKNNTPFSPAASSAAPCRRLWNYMVRQEACQDVFIRAIFGKRKTFTFDQPTIVSQG
AVAPSVSNSVVDFSQHSDVGINLSANANKEQSQSQLIEPVRIIHKDQESISAFCINLTSS
GMMALATPKELQEIDISLLLESPNWLEDECEFDILNLTKDVDTLPASGFLVIQASSADKA
AAQNQVQNLQQAPLPVSPQPGATPQSGRGASVVLKHKIDNIKRMSAHPLMPLYLTGAQDG
SVQMWEWGHQQAVCTPRPPGTFAKVTRCRFSQHGNKFGIADGDGKLSLWQVGLASQTNRS
FFSYECHNKLITDFVFLGSCSLVATAGHSSESKNVAMWDTLLPQKKAMVSSFACHDQGAS
SLAYAPQHQLLISAGKKGDVCIFDVRQRTLRHRFQAHDNAIKCLAIDPHEEIFVTGDSNG
DIKVWALPAPINTPLFYYPGEHKHSSFFKHTGQGVTQIYIDQVGRMFSCGADGSMKIRSL
PDRDMIVNAIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g3357.t1 | Coils | Coil | Coil | 1722 | 1742 | - |
| 18 | g3357.t1 | Coils | Coil | Coil | 3172 | 3192 | - |
| 17 | g3357.t1 | Gene3D | G3DSA:2.130.10.10 | - | 3172 | 3488 | 1.7E-33 |
| 42 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 526 | - |
| 44 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 504 | - |
| 37 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 526 | - |
| 39 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 689 | - |
| 41 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 737 | - |
| 43 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 717 | - |
| 45 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 737 | - |
| 40 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1675 | 1695 | - |
| 36 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2326 | 2363 | - |
| 38 | g3357.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2334 | 2355 | - |
| 9 | g3357.t1 | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | 1 | 501 | 0.0 |
| 14 | g3357.t1 | PANTHER | PTHR13950:SF12 | DMX-LIKE PROTEIN 1 | 1 | 501 | 0.0 |
| 7 | g3357.t1 | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | 565 | 656 | 0.0 |
| 12 | g3357.t1 | PANTHER | PTHR13950:SF12 | DMX-LIKE PROTEIN 1 | 565 | 656 | 0.0 |
| 5 | g3357.t1 | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | 729 | 1308 | 0.0 |
| 10 | g3357.t1 | PANTHER | PTHR13950:SF12 | DMX-LIKE PROTEIN 1 | 729 | 1308 | 0.0 |
| 8 | g3357.t1 | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | 1397 | 2172 | 0.0 |
| 13 | g3357.t1 | PANTHER | PTHR13950:SF12 | DMX-LIKE PROTEIN 1 | 1397 | 2172 | 0.0 |
| 6 | g3357.t1 | PANTHER | PTHR13950 | RABCONNECTIN-RELATED | 2206 | 3489 | 0.0 |
| 11 | g3357.t1 | PANTHER | PTHR13950:SF12 | DMX-LIKE PROTEIN 1 | 2206 | 3489 | 0.0 |
| 3 | g3357.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 178 | 213 | 3.2E-4 |
| 1 | g3357.t1 | Pfam | PF12234 | RAVE protein 1 C terminal | 1385 | 1666 | 3.4E-8 |
| 2 | g3357.t1 | Pfam | PF12234 | RAVE protein 1 C terminal | 1852 | 2177 | 1.2E-68 |
| 4 | g3357.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 3391 | 3425 | 0.0097 |
| 22 | g3357.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 2505 | - |
| 23 | g3357.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2506 | 2531 | - |
| 20 | g3357.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 2532 | 2705 | - |
| 24 | g3357.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2706 | 2726 | - |
| 21 | g3357.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 2727 | 3491 | - |
| 46 | g3357.t1 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3214 | 3435 | 21.832 |
| 47 | g3357.t1 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3394 | 3425 | 12.28 |
| 33 | g3357.t1 | SMART | SM00320 | WD40_4 | 43 | 84 | 11.0 |
| 29 | g3357.t1 | SMART | SM00320 | WD40_4 | 102 | 138 | 16.0 |
| 27 | g3357.t1 | SMART | SM00320 | WD40_4 | 173 | 214 | 1.1E-4 |
| 26 | g3357.t1 | SMART | SM00320 | WD40_4 | 241 | 289 | 0.26 |
| 34 | g3357.t1 | SMART | SM00320 | WD40_4 | 1161 | 1202 | 13.0 |
| 35 | g3357.t1 | SMART | SM00320 | WD40_4 | 3211 | 3246 | 8.6 |
| 25 | g3357.t1 | SMART | SM00320 | WD40_4 | 3255 | 3290 | 0.3 |
| 32 | g3357.t1 | SMART | SM00320 | WD40_4 | 3297 | 3339 | 2.2 |
| 31 | g3357.t1 | SMART | SM00320 | WD40_4 | 3345 | 3384 | 0.0055 |
| 28 | g3357.t1 | SMART | SM00320 | WD40_4 | 3387 | 3426 | 3.2E-6 |
| 30 | g3357.t1 | SMART | SM00320 | WD40_4 | 3440 | 3479 | 6.7 |
| 16 | g3357.t1 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 288 | 5.5E-16 |
| 15 | g3357.t1 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 3214 | 3486 | 1.97E-37 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K24155 (rabconnectin-3a)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
