General information for g3360.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 12.
Parent gene
- The parent gene g3360 is located on chr_3: 24837532..24838060 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3360 | g3360.t15 | TTS | g3360.t15 | 24836187 | 24836187 |
| chr_3 | g3360 | g3360.t15 | isoform | g3360.t15 | 24837018 | 24837965 |
| chr_3 | g3360 | g3360.t15 | exon | g3360.t15.exon1 | 24837018 | 24837053 |
| chr_3 | g3360 | g3360.t15 | cds | g3360.t15.CDS1 | 24837018 | 24837053 |
| chr_3 | g3360 | g3360.t15 | exon | g3360.t15.exon2 | 24837113 | 24837965 |
| chr_3 | g3360 | g3360.t15 | cds | g3360.t15.CDS2 | 24837113 | 24837814 |
| chr_3 | g3360 | g3360.t15 | TSS | g3360.t15 | 24838061 | 24838061 |
Sequences
>g3360.t15 Gene=g3360 Length=889
ATGCCTGGTGAGTTTAATAATCGAAAAAATATTAAGTTTAGTTCACTTTCCTTCTAATAT
TCAGAGAAATCGAAGGAAAACTAAAATTTCTTTTAACCTCTTGCACAATGATTTGGCGAT
TTTTAATATTTTGATTTTGTTCACAGAAAAAATGGACACATTTAATCCAGCTATGCCTAC
TTATGAGGGTGGCAGGATCATTAAAATGGAAGTTGACTACAGTAGTACATGTGACGAAAC
AATTCCTCGCTGCAAAGAAATGGCAAAGAATGATTTGAAATTTAATGAAGCTCTAGAGAC
TTTGTTGTCATTGGAAAAGCAAGCTCGAATTGGCTCAGATATGATGTCAAGTGCTCGCAT
TTTAGTTGCTATTGTCCAGATTATATTCGATGCCAAAAAATGGGATTTATTAAATGAATA
TATTTCAATTTTGGTGAAGAAACGCTCACAATCTAAACAAGCAATTGTGAAGATGGTACA
AGAGTGCGTTACTTATGTTGATCAAACACCAGATAAGGAGACAAAAATTAAACTCATTGA
CACATTGAGAGCAGTTACAGAAGGAAAGATTTATGTTGAAATTGAACGAGCTCGTCTCAC
AAAAATTCTATCAGACATCAAAGAGGCTGATGGAGATATTCTCGGTGCAGCGACAATTAT
GGAGGCATTACAGATTGAAACATATGGTACTATGGATAAAAGAGAGAAAGTTGAGTTTAT
TCTTGAGCAAATGAGATTGTGCTTGGCTAAACACGATCTTGTTCGAACTCAAATCATTTC
AAAGAAAATCAATACAAAGTTCTTTAATGATCCAGAACAACAAGACTTGAAATTAAAGTA
TTATGAACTGATGATTCTCTTAGATCAAGATCAATCATATATTAAAACT
>g3360.t15 Gene=g3360 Length=246
MDTFNPAMPTYEGGRIIKMEVDYSSTCDETIPRCKEMAKNDLKFNEALETLLSLEKQARI
GSDMMSSARILVAIVQIIFDAKKWDLLNEYISILVKKRSQSKQAIVKMVQECVTYVDQTP
DKETKIKLIDTLRAVTEGKIYVEIERARLTKILSDIKEADGDILGAATIMEALQIETYGT
MDKREKVEFILEQMRLCLAKHDLVRTQIISKKINTKFFNDPEQQDLKLKYYELMILLDQD
QSYIKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g3360.t15 | Coils | Coil | Coil | 245 | 246 | - |
| 1 | g3360.t15 | PANTHER | PTHR10855:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 | 17 | 243 | 2.2E-95 |
| 2 | g3360.t15 | PANTHER | PTHR10855 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 | 17 | 243 | 2.2E-95 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
