General information for g3376.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3376 is located on chr_3: 24965665..24967852 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3376 | g3376.t6 | TTS | g3376.t6 | 24962028 | 24962028 |
| chr_3 | g3376 | g3376.t6 | isoform | g3376.t6 | 24962494 | 24964293 |
| chr_3 | g3376 | g3376.t6 | exon | g3376.t6.exon1 | 24962494 | 24964293 |
| chr_3 | g3376 | g3376.t6 | cds | g3376.t6.CDS1 | 24962621 | 24963736 |
| chr_3 | g3376 | g3376.t6 | TSS | g3376.t6 | NA | NA |
Sequences
>g3376.t6 Gene=g3376 Length=1800
TGTTAATGATGCAATCAATTATTTAATTAAAAAAAGTTGAAAATAAAATATCAAAAATTT
AAATTTTTTTTGTTTCAAAAGTTGCGTTCAAGAATTAATCCACACAAAAAAACATTGCAT
CAAAACATCATTTTTGTGGATTATAAGTGTGCGAAAGTAAAGTGTGTTTTCAGTCAAAAG
CAAGTTAAAGAAAAAGTTTTAATATTTATAGGATATTACTATAAATTAACTGTTTTTAAA
TGTGATTAACTAACCAACACAATTAGCTAAATTTGTCGTGAATTAATTCATGACAGTGTA
GCTTAATATTTATTGGATAATTTAAAGTTGAAGAATTAAGCACGTGGAGAATATAAAAAA
TACAGGTTGATTCCGATTATGAGATAATTAAGCTCGATCCAAATGTTATTTATGAAACAG
ATGATGATGAGGATTTATTGAAAGAAGAGGAATATGTTGAGAAACAAAGATCTGCTAAAA
ATTGTGAAAATGCGGCCGAATTTGTTTTCATCGACGAAATCAACAAAACAAAAAATGAGG
AAGAAGATAATAAACAAATGGTAGATGATATCATTGATAAAAAGTCAAGTGCAGAATCAA
ACGACTTGCCTAATGAGGTAATTATAGAGCAAAAACCTCGTAAAAAACTGAATTTAGCGG
AATATAAAATTGTGCGTGCTAATAGACCTGCACCAATTGTCGAAGAATGCGAAAAAGTTG
TGCTCGAATTATGTGAAAATATTCCTGAAACTCTTCCAATTATTGAATTGCCAACTGATC
CTCGAAGCATTAAAGCTCTTCTTTCTGCTCAAAATCAGCAGCCGCAACCTCAATCAATAT
CTCAACCTGAACCAATGCAAATTGATAAAGCTTTAAATATGAAAGAAGAAGAAAAAGTTC
CAAAAGAAGTAGATCCAGATTATGAAGAAATTGTTTTAATATCAATGGAATGCAATACAG
ATATATCAATTTCACCACAAGAGAATGATGAGCAATTGGAAACAAAAGCTCCAGCCAAAT
TTCTTACAAATATCGTCAATACTATTAAGAAAGACGAATACGCAAAAACTTTGCTTAGTT
CTTCAACGACTCTCTTTTCTAGTATTAATGCAGTAGTTCATGAAAAGTGTAATTCGTTGA
ATGAAGCAACTATTGAAAATAGCAGTAGTCGCAAGAACTCAGAACATGGTGAGAACAAAA
TTATAATGCATTTGCGAAAAGATCGGATACGACCTAAATGCTCAAGTTTTGCTATGCAAA
CAGAAAATTCTCCACTCTTTCCACCGCTTTTATTGTCACCTGATATTATTTTCAATCGTA
TCAAAAATGTAAGAAATTTCCGAAGAAAATCACGAACTCGTAGTAGAAGCCGATCAAGAA
GTAGAAGTTTTAGTCCAGAAAATGATTATTATAAACGTAGCAATTATAAATATTCACGTT
CATTACACTCTTCTACTGTGAATAGTAGCGAATTTGATTCATCAGAAAGTGACAGTTCTG
CCTATAGCTCATGTCGTTCATCAGATTACGATTCAATTAGAAAATTCGATAATAGAATAT
CAGGGCAAAGATATCGTAATCATAGATCATCTAATTATACTTACGAAGGTAATATTCATA
TAACATTTTTTAAAATATTGAATTCTCATTTGTTTGACTATAATTTTTTATAGAGGAAAG
AAAAGTCGTTTATATTGGTGGGTTAACTGAAGATGTAACAAAAGAGGATTTACGTCGAAA
TTTTTTAAAATATGGAACGATAAAAAAGATTTCTATTCATGCAAAGCAAGATGTTAATGG
>g3376.t6 Gene=g3376 Length=371
MVDDIIDKKSSAESNDLPNEVIIEQKPRKKLNLAEYKIVRANRPAPIVEECEKVVLELCE
NIPETLPIIELPTDPRSIKALLSAQNQQPQPQSISQPEPMQIDKALNMKEEEKVPKEVDP
DYEEIVLISMECNTDISISPQENDEQLETKAPAKFLTNIVNTIKKDEYAKTLLSSSTTLF
SSINAVVHEKCNSLNEATIENSSSRKNSEHGENKIIMHLRKDRIRPKCSSFAMQTENSPL
FPPLLLSPDIIFNRIKNVRNFRRKSRTRSRSRSRSRSFSPENDYYKRSNYKYSRSLHSST
VNSSEFDSSESDSSAYSSCRSSDYDSIRKFDNRISGQRYRNHRSSNYTYEGNIHITFFKI
LNSHLFDYNFL
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
