General information for g3380.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 26S proteasome non-ATPase regulatory subunit 2.
Parent gene
- The parent gene g3380 is located on chr_3: 24994152..24994990 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3380 | g3380.t6 | isoform | g3380.t6 | 24992629 | 24993411 |
| chr_3 | g3380 | g3380.t6 | exon | g3380.t6.exon1 | 24992629 | 24993341 |
| chr_3 | g3380 | g3380.t6 | cds | g3380.t6.CDS1 | 24992721 | 24993341 |
| chr_3 | g3380 | g3380.t6 | exon | g3380.t6.exon2 | 24993401 | 24993411 |
| chr_3 | g3380 | g3380.t6 | cds | g3380.t6.CDS2 | 24993401 | 24993409 |
| chr_3 | g3380 | g3380.t6 | TTS | g3380.t6 | 24994243 | 24994243 |
| chr_3 | g3380 | g3380.t6 | TSS | g3380.t6 | NA | NA |
Sequences
>g3380.t6 Gene=g3380 Length=724
TCGCTTGTGGTATTGTAAACTGTGGTGTAAGAAATGAAGTAGATCCTGCATTGGCTTTAT
TATCCGATTACGTTTTGCATACAAATACTACAATGCGAATTGGATCAATTCTTGGACTTG
GACTTGCTTATGCCGGATCGAATCGTACAGATGTTATTGAACTCATTTCATCAACATTTA
GCTCTGATAAACGAGGTGGTTTAACTAATGAAGTGTTGGGTATTGCTGCTTTATCACTTG
GTTTGATTGCTGTTGGTAGCTGTAATCCTGATGTGACTGAAAGATTGACTCAAATTATTC
AAGAACGTACTGAGAGTGATTTTCGTGATACATTCACGAAATTTTTGTTCCTTGGCTTAG
GCCTTGTTTATTTGGGACGTCAAGAGGCATCTGAAGCTTGCATCGCTGCTTTAGCTGTAA
TTGATGAACCATACAAATCAACAGTTACTACAATGGTTGAAATTTGTGCATATGCAGGCA
CTGGAAATGTTTTAAAAATTCAGCATTTGCTTCATATTTGTAGTGAACATTATGAACCAT
ATACACCTGATACTAGTGACAAAAGCAAAAAAGATCAAAATGAACAGCAGCAAAAAGAAG
AACGCGAAAAGGATTTATCTCAATGTCAAGCTGTAGCTGTTTTAGGTATTGCATTGATTG
CTCTTGGTGAAGACATTGGTGCAGAAATGGCTTTCCGATCATTTGGAAATTTGCTTCGTT
ATTG
>g3380.t6 Gene=g3380 Length=210
MRIGSILGLGLAYAGSNRTDVIELISSTFSSDKRGGLTNEVLGIAALSLGLIAVGSCNPD
VTERLTQIIQERTESDFRDTFTKFLFLGLGLVYLGRQEASEACIAALAVIDEPYKSTVTT
MVEICAYAGTGNVLKIQHLLHICSEHYEPYTPDTSDKSKKDQNEQQQKEEREKDLSQCQA
VAVLGIALIALGEDIGAEMAFRSFGNLLRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3380.t6 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 156 | 3.9E-41 |
| 4 | g3380.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 173 | - |
| 2 | g3380.t6 | PANTHER | PTHR10943 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 1 | 210 | 1.3E-65 |
| 3 | g3380.t6 | PANTHER | PTHR10943:SF11 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 | 1 | 210 | 1.3E-65 |
| 1 | g3380.t6 | Pfam | PF01851 | Proteasome/cyclosome repeat | 4 | 31 | 5.7E-6 |
| 7 | g3380.t6 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 8 | g3380.t6 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 9 | g3380.t6 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 10 | g3380.t6 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 6 | g3380.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 210 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000502 | proteasome complex | CC |
| GO:0042176 | regulation of protein catabolic process | BP |
| GO:0030234 | enzyme regulator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
