General information for g3382.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynactin subunit 4.
Parent gene
- The parent gene g3382 is located on chr_3: 24996029..24996967 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3382 | g3382.t3 | TSS | g3382.t3 | 24995077 | 24995077 |
| chr_3 | g3382 | g3382.t3 | isoform | g3382.t3 | 24995119 | 24996393 |
| chr_3 | g3382 | g3382.t3 | exon | g3382.t3.exon1 | 24995119 | 24995753 |
| chr_3 | g3382 | g3382.t3 | cds | g3382.t3.CDS1 | 24995454 | 24995753 |
| chr_3 | g3382 | g3382.t3 | exon | g3382.t3.exon2 | 24995814 | 24995976 |
| chr_3 | g3382 | g3382.t3 | cds | g3382.t3.CDS2 | 24995814 | 24995976 |
| chr_3 | g3382 | g3382.t3 | exon | g3382.t3.exon3 | 24996034 | 24996393 |
| chr_3 | g3382 | g3382.t3 | cds | g3382.t3.CDS3 | 24996034 | 24996392 |
| chr_3 | g3382 | g3382.t3 | TTS | g3382.t3 | 24997047 | 24997047 |
Sequences
>g3382.t3 Gene=g3382 Length=1158
ATGGAATATTTATTATCAAAAAATGTAGAATATGTCTGCGAATGTGGACTTTTAAAGCCG
CTAACTAATCTTTACTTCTGTAGACATTGCTTAAACTTAAGATGTTTCTTTTGCTGCCAT
CATGAGGTGAGATAATTAAAATTCAAAAATGTGACTCATCACTAAAATTTTCTTCAATTT
TTGCATAGGTGGACTCGCATTTCTGTCGAAATTGTCTTGAAAATATTCCTTCAGGAGAGG
CAAAATTAAGGAAGAATAAATGTAATACTTGCTTTGATTGTCCTTCATGCACTTTGTCGG
CTCTCTCTGCACGAGCTACAACAATTCAAGTTCCAATGACAAAAGAAGTGAAAGAAGGTG
GTGAGGGATCTGAAATAGAAGCGAGCAGCGGTAAAATGGTTTCAAAAAAGATGTACTATT
TAGCATGTTTGGCTTGTCGTTTTTCATCGCGAGATGTAGGGATTAGTGATCAGCCATCTC
AAAATTTTTTTTGGCCTGAGCAAGAATATATGCATGCAATAAGATTCAATACAATATTGA
ATCATTATTACTCAGTTGTGCTTCATGATAAGCAGCTTAAACAGGAAGAAAGACGTCGTC
GATCGACAAAACAGTCGAAATTCCCAAACATGACTGATCGCACTGGATTAAATGTTTCAG
CTATAAGACGTCAAATGGGATTTGATAAAAGTGCAGCTAAACCTAAAAGTAAACCGACTG
CAATAGCACCATCAATTGCAGAGGATGTTGATGATTTACCAGAAGAGATCTTTACTCAGC
CTATTAATTTGAAAAATATAACAACTATTCAGCAGCGTTTTACGCAACCAGCTAATCAAC
CAGAAAGTGTTAAGCATCTGTATCCACAACATAAGAATCTCTCTATTAAACGATCAATTC
GATGTCGTCATTGCGAGCATAATGTAATCAAACCAGAATATAATCCAACATCAATTAAAT
ATAGAATTCAACAATTTGCAAGCAGTCATGTGCCTGAAGTTCGTATAATAAAATGTGACC
AATTGGTGCCAAATAAGAGTGCATTAATTACTTTAAAAATTACCAATCCAACTATGAATG
ACATGATAATCACAATTATGGATCTTCCAACTGAAGAAGAGGAAAAAATGATGATTGAAG
AAATGAGAAAGAACTTTG
>g3382.t3 Gene=g3382 Length=274
MTKEVKEGGEGSEIEASSGKMVSKKMYYLACLACRFSSRDVGISDQPSQNFFWPEQEYMH
AIRFNTILNHYYSVVLHDKQLKQEERRRRSTKQSKFPNMTDRTGLNVSAIRRQMGFDKSA
AKPKSKPTAIAPSIAEDVDDLPEEIFTQPINLKNITTIQQRFTQPANQPESVKHLYPQHK
NLSIKRSIRCRHCEHNVIKPEYNPTSIKYRIQQFASSHVPEVRIIKCDQLVPNKSALITL
KITNPTMNDMIITIMDLPTEEEEKMMIEEMRKNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3382.t3 | PANTHER | PTHR13034 | DYNACTIN P62 SUBUNIT | 20 | 262 | 0 |
| 1 | g3382.t3 | Pfam | PF05502 | Dynactin p62 family | 151 | 229 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005869 | dynactin complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
