General information for g3382.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynactin subunit 4.
Parent gene
- The parent gene g3382 is located on chr_3: 24996029..24996967 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3382 | g3382.t7 | TSS | g3382.t7 | 24995077 | 24995077 |
| chr_3 | g3382 | g3382.t7 | isoform | g3382.t7 | 24995822 | 24996967 |
| chr_3 | g3382 | g3382.t7 | exon | g3382.t7.exon1 | 24995822 | 24995976 |
| chr_3 | g3382 | g3382.t7 | cds | g3382.t7.CDS1 | 24995853 | 24995976 |
| chr_3 | g3382 | g3382.t7 | exon | g3382.t7.exon2 | 24996034 | 24996395 |
| chr_3 | g3382 | g3382.t7 | cds | g3382.t7.CDS2 | 24996034 | 24996395 |
| chr_3 | g3382 | g3382.t7 | exon | g3382.t7.exon3 | 24996501 | 24996682 |
| chr_3 | g3382 | g3382.t7 | cds | g3382.t7.CDS3 | 24996501 | 24996682 |
| chr_3 | g3382 | g3382.t7 | exon | g3382.t7.exon4 | 24996757 | 24996967 |
| chr_3 | g3382 | g3382.t7 | cds | g3382.t7.CDS4 | 24996757 | 24996967 |
| chr_3 | g3382 | g3382.t7 | TTS | g3382.t7 | 24997047 | 24997047 |
Sequences
>g3382.t7 Gene=g3382 Length=910
TGGATTAAATGTTTCAGCTATAAGACGTCAAATGGGATTTGATAAAAGTGCAGCTAAACC
TAAAAGTAAACCGACTGCAATAGCACCATCAATTGCAGAGGATGTTGATGATTTACCAGA
AGAGATCTTTACTCAGCCTATTAATTTGAAAAATATAACAACTATTCAGCAGCGTTTTAC
GCAACCAGCTAATCAACCAGAAAGTGTTAAGCATCTGTATCCACAACATAAGAATCTCTC
TATTAAACGATCAATTCGATGTCGTCATTGCGAGCATAATGTAATCAAACCAGAATATAA
TCCAACATCAATTAAATATAGAATTCAACAATTTGCAAGCAGTCATGTGCCTGAAGTTCG
TATAATAAAATGTGACCAATTGGTGCCAAATAAGAGTGCATTAATTACTTTAAAAATTAC
CAATCCAACTATGAATGACATGATAATCACAATTATGGATCTTCCAACTGAAGAAGAGGA
AAAAATGATGATTGAAGAAATGAGAAAGAACTTTGAGAAAAACTTGAGTGTTTCGAATAA
ATCATCTTTAATGCGTCCATCATTAATTGAAGATTCAAGAATTGTGTCATGCAAGATCAC
TGCAAAACTTGAACTACCCGACAGTTCATTTGTCATCAATCAACGTGATGATTCTGCGGA
ATTTGATGACGACGTTCAATCAGATAAGAAAGATCCAAAATTCATTTTATGGCGAAAAGC
GAATAAGATTGCTATCCAGCTGAGTATTACACCAAATGGTGAATTGAAGGTCAATGACGA
TGTCAAGATTGGTTTCTCAATGAATTTCACATATAGCTCAGTTCCATCTTCAACGCCTGA
AAAGAAAGAAACTCAGCGTTATGCATTATGTGCTCGCATTTATATTAATGCTGGAAAAAT
TGTTCAGTAA
>g3382.t7 Gene=g3382 Length=292
MGFDKSAAKPKSKPTAIAPSIAEDVDDLPEEIFTQPINLKNITTIQQRFTQPANQPESVK
HLYPQHKNLSIKRSIRCRHCEHNVIKPEYNPTSIKYRIQQFASSHVPEVRIIKCDQLVPN
KSALITLKITNPTMNDMIITIMDLPTEEEEKMMIEEMRKNFEKNLSVSNKSSLMRPSLIE
DSRIVSCKITAKLELPDSSFVINQRDDSAEFDDDVQSDKKDPKFILWRKANKIAIQLSIT
PNGELKVNDDVKIGFSMNFTYSSVPSSTPEKKETQRYALCARIYINAGKIVQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3382.t7 | PANTHER | PTHR13034 | DYNACTIN P62 SUBUNIT | 8 | 290 | 0 |
| 1 | g3382.t7 | Pfam | PF05502 | Dynactin p62 family | 39 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005869 | dynactin complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
