General information for g3383.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3383 is located on chr_3: 25003947..25004947 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3383 | g3383.t2 | isoform | g3383.t2 | 24998473 | 24999802 |
| chr_3 | g3383 | g3383.t2 | exon | g3383.t2.exon1 | 24998473 | 24999802 |
| chr_3 | g3383 | g3383.t2 | cds | g3383.t2.CDS1 | 24999208 | 24999705 |
| chr_3 | g3383 | g3383.t2 | TSS | g3383.t2 | NA | NA |
| chr_3 | g3383 | g3383.t2 | TTS | g3383.t2 | NA | NA |
Sequences
>g3383.t2 Gene=g3383 Length=1330
GGTATGCAAAAATTTTTTTTTATTTTGAATTAGTTCTTATGATTTTATTTTATTTTTGGT
TCTAACAGTTCAACATCAACTTAACGACTATTCTAACATGCTTTCTGGTTATTCCTCCTC
ATCAGGCACTACAGCATCATCAAATTTGACTCCAGTTTCGACAGCACTTGGCTCTTCATC
GCTTCTACCGCCATCAATAGGCGCTCCTCATCCACATTATCCTTATACATCACATGCTAC
TGCAACTCAATCGCCCTATTCAGCAAATCCATTCTCTGTAAGTAGTTTGACATCATCGAA
TTATCCTTCGGCAGCTGCAGCAGCAATGAATAGTTATCATCAAAATCTAATGGGAACGAG
TCATTTAACGTCATCTTTTATGGAACCACATATGCCAGTTCCTGTTACGCCTCTTTATCA
TTCTTATCAACAACAAGGCTATCCTGGTTATCCTGCACCTCCTCATCATCATCCTTCAGC
TGCAGCAGCCGCTTTACATATGTCAAACTATCCCTATTACACAAACACAGGCTACACACA
AGCACCTGGCAGCCATTCAACGTACCATTCAATGTTTGACAGAATAAACTTTTGATAAGT
GAAATAAAATAGCATCCATAATTACTTAAGGCAATATGATACAAAGATGAAAACAAATGA
GTGAGTGAAGTGAACAAATAACATGTTTTTAATTTCTCAAATGGTGGTACATAAATTATT
AAAAAAATTTAAAAAAATGATGATTTTTTAAAGAAATTAAACATGACAAACGAAAAATGA
TCAATACATTAAAAACTCTAATATAATGTGTACTTTAAAGTTTTTTAGGGAGAAATAGTG
TTTCATATATATGCATCTACTACTTAAATTAGTAATTGACATCTCTAACTATGACATATT
TTTAGTTTGTTTCTTCGATTTCTAATTACATTTAGTGGCCATCGAAGCAATATATTCAAA
GATGTAAAAGATACATAATGAACTTTTTCTGTCTTGTTACATACATAAAACACTTAATGC
CATCTTTATCGAATGACGTAATGAATTGAAATTAATACAGGGTAAAAAAATTAATAAGCA
AAAAAGCTAAATGAAAAAAAAGAAAATTTTATAGATCACTTTTTTGTGAATATATATTTA
ATGAAAAAAAAAAAAAGATTATGATCCTTACATTAAAAAGTTTTTTTTGTCAAGTCTTTA
AAAAGTCTTCTGTAAGGGTGATAAAATTAAAATTTAATAAATAATATAATGGTAAAGAAA
TTTTTTCGCAAACTTTTAAATCTTTTTCTTGTGCTAATTAAACATACACACATGCTACTT
AAGTCTTATT
>g3383.t2 Gene=g3383 Length=165
MLSGYSSSSGTTASSNLTPVSTALGSSSLLPPSIGAPHPHYPYTSHATATQSPYSANPFS
VSSLTSSNYPSAAAAAMNSYHQNLMGTSHLTSSFMEPHMPVPVTPLYHSYQQQGYPGYPA
PPHHHPSAAAAALHMSNYPYYTNTGYTQAPGSHSTYHSMFDRINF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g3383.t2 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
