Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase polo.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3385 g3385.t1 TSS g3385.t1 25011855 25011855
chr_3 g3385 g3385.t1 isoform g3385.t1 25012075 25014916
chr_3 g3385 g3385.t1 exon g3385.t1.exon1 25012075 25012170
chr_3 g3385 g3385.t1 cds g3385.t1.CDS1 25012075 25012170
chr_3 g3385 g3385.t1 exon g3385.t1.exon2 25012290 25012678
chr_3 g3385 g3385.t1 cds g3385.t1.CDS2 25012290 25012678
chr_3 g3385 g3385.t1 exon g3385.t1.exon3 25012734 25013194
chr_3 g3385 g3385.t1 cds g3385.t1.CDS3 25012734 25013194
chr_3 g3385 g3385.t1 exon g3385.t1.exon4 25013260 25013587
chr_3 g3385 g3385.t1 cds g3385.t1.CDS4 25013260 25013587
chr_3 g3385 g3385.t1 exon g3385.t1.exon5 25014401 25014647
chr_3 g3385 g3385.t1 cds g3385.t1.CDS5 25014401 25014647
chr_3 g3385 g3385.t1 exon g3385.t1.exon6 25014713 25014916
chr_3 g3385 g3385.t1 cds g3385.t1.CDS6 25014713 25014916
chr_3 g3385 g3385.t1 TTS g3385.t1 25015165 25015165

Sequences

>g3385.t1 Gene=g3385 Length=1725
ATGTCGAAAAAAGACGATATTGCTGAAGAAATTCCTGATTTACTCTACGATGCAAATACA
GGTATCACTTATAGAAAACTTCGATTCTTCGGAAAGGGAGGATTTGCAAAGTGTTATGAG
ATCCAGAATACTCAATCAAAAGAAACATATGCTGGCAAGATTGTCTCAAAAAAGCTCATG
ATGAAAAACAATCAAAAAGAAAAAATGACTCAAGAAATTCAAATTCACAAGTCGTTAAAT
CACAAAAATATAGTTGGCTTTAAAAGTTTTTTTGACGATTCAAATAATGTCTATATAGTT
CTGGAACTCTGCAAGAAACGTTCAATGATGGAACTTCATAAACGAAGAAAAGTGGTTACT
GATTATGAATGCCGTTACTACATTCATCAAATTGTAAGCGGAGTAAAATATCTTCATGAC
CACCATATTATTCATCGCGATCTTAAACTTGGAAATCTCTTTTTGAATGATGAATTACAT
GTTAAAATCGGTGACTTTGGTCTTGCTACTAAAATTGAATTCGAAGGAGAAAGAAAGAAG
ACTTTATGTGGGACCCCAAATTATATTGCTCCTGAGATATTGAATAAAAAAGGACATTCC
TATGAGGTTGATATTTGGTCGATTGGCTGCGTTATGTATACGCTTCTTGTTGGTCAACCT
CCATTTGAGACAAAGAGCTTAAAAGATACATATTCAAAAATTCGAAAGTGTGATTATAGA
TTGCCCTCGAACTTGCGCAAAAATGCTGCAGATATGATTATTGCTATGCTTCAATCTGAT
CCAGAAAAACGTCCAACAATTGATAAGCTATTTCATTTTGATTTCTTATCATCTGCTCCA
ATTCCCAAGTCATTACCATATTCATGTTTGACAACAGCTCCTCGTCCAGAATTACTTGAA
TATAATGATAAACGTCGCCCATTGTCGGAAATGAATGGTGGCGGTGATGAAACTCACACA
AATATGTCATTCTTGAAGAATAATTTGCATGATGCTATTACAGCATCTGGAATGATGACT
GCTTCAAGTCAATTGCAGAAACAAAATTTGGAACTGCTGTATCAGCAACTGACTGAATTA
TTTGGAACAAAATTGAAACGCCATCTTGCTGATTTAGGTGATGAATACAGTGATCCAGCT
TCTAATCCACTTTTCTGGGTCAGTAAATGGGTCGATTATAGTGATAAATACGGTTTTGGA
TATCAATTATGTGACGAAGGAATGGGAGTTATGTTTAACGATACTACAAAATTACTCATG
CTAAATAATGGAATAAATGTTCATTTCATCGATAAAGAAGGAAAAGAATCCTACTTTAGT
GTTCAAAATTACCCATCGAAACTAGAAAAGAAAATGAAACTTTTGACTTATTTTAAGAGA
TACATGTCTGAACATCTTGTTAAAGCTGGAGCAAATGCTGTTGTAAAAGAAAATGATAAT
GTATCACGTATGCCTCATCTTCATACTTGGTTCCGAACACAGTGTGCTGTAGTAATGCAT
CTTACAAATGGAACAGTACAACTCAATTTCTCAGATCATCAAAAAATTATTTTGTGTCCA
CTCATGCAAGCTGTTACATTATTAGATAATGAAAAGAATTTCAGGACTTATCCATTTAGT
GCGATTGCTGAACATGGTTGCAGTAATGATTTATATCAGAAACTACGTTATGCGCATGAA
AAGTTATTAAAATTAATTGAAAAACTTTCATCGGAATGCTACTGA

>g3385.t1 Gene=g3385 Length=574
MSKKDDIAEEIPDLLYDANTGITYRKLRFFGKGGFAKCYEIQNTQSKETYAGKIVSKKLM
MKNNQKEKMTQEIQIHKSLNHKNIVGFKSFFDDSNNVYIVLELCKKRSMMELHKRRKVVT
DYECRYYIHQIVSGVKYLHDHHIIHRDLKLGNLFLNDELHVKIGDFGLATKIEFEGERKK
TLCGTPNYIAPEILNKKGHSYEVDIWSIGCVMYTLLVGQPPFETKSLKDTYSKIRKCDYR
LPSNLRKNAADMIIAMLQSDPEKRPTIDKLFHFDFLSSAPIPKSLPYSCLTTAPRPELLE
YNDKRRPLSEMNGGGDETHTNMSFLKNNLHDAITASGMMTASSQLQKQNLELLYQQLTEL
FGTKLKRHLADLGDEYSDPASNPLFWVSKWVDYSDKYGFGYQLCDEGMGVMFNDTTKLLM
LNNGINVHFIDKEGKESYFSVQNYPSKLEKKMKLLTYFKRYMSEHLVKAGANAVVKENDN
VSRMPHLHTWFRTQCAVVMHLTNGTVQLNFSDHQKIILCPLMQAVTLLDNEKNFRTYPFS
AIAEHGCSNDLYQKLRYAHEKLLKLIEKLSSECY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g3385.t1 CDD cd14099 STKc_PLK 23 276 4.47426E-154
15 g3385.t1 CDD cd13118 POLO_box_1 383 470 5.75014E-37
14 g3385.t1 CDD cd13117 POLO_box_2 485 565 9.97165E-32
13 g3385.t1 Coils Coil Coil 552 572 -
11 g3385.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 10 104 2.2E-34
12 g3385.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 109 282 1.8E-59
10 g3385.t1 Gene3D G3DSA:3.30.1120.30 - 355 564 4.2E-90
9 g3385.t1 Gene3D G3DSA:3.30.1120.30 - 389 484 4.2E-90
4 g3385.t1 PANTHER PTHR24345:SF86 SERINE/THREONINE-PROTEIN KINASE PLK1 8 568 1.2E-188
5 g3385.t1 PANTHER PTHR24345 SERINE/THREONINE-PROTEIN KINASE PLK 8 568 1.2E-188
3 g3385.t1 Pfam PF00069 Protein kinase domain 24 275 1.8E-71
1 g3385.t1 Pfam PF00659 POLO box duplicated region 394 455 5.5E-19
2 g3385.t1 Pfam PF00659 POLO box duplicated region 492 558 3.1E-18
17 g3385.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 143 155 -
21 g3385.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 24 276 49.771
19 g3385.t1 ProSiteProfiles PS50078 POLO box domain profile. 393 456 20.105
20 g3385.t1 ProSiteProfiles PS50078 POLO box domain profile. 491 559 23.266
18 g3385.t1 SMART SM00220 serkin_6 24 276 8.3E-91
6 g3385.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 24 300 9.98E-84
8 g3385.t1 SUPERFAMILY SSF82615 Polo-box domain 350 472 9.29E-39
7 g3385.t1 SUPERFAMILY SSF82615 Polo-box domain 478 567 2.62E-29

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values