Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase polo.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3385 g3385.t3 TSS g3385.t3 25011855 25011855
chr_3 g3385 g3385.t3 isoform g3385.t3 25012075 25013193
chr_3 g3385 g3385.t3 exon g3385.t3.exon1 25012075 25012170
chr_3 g3385 g3385.t3 cds g3385.t3.CDS1 25012075 25012170
chr_3 g3385 g3385.t3 exon g3385.t3.exon2 25012290 25012678
chr_3 g3385 g3385.t3 cds g3385.t3.CDS2 25012290 25012678
chr_3 g3385 g3385.t3 exon g3385.t3.exon3 25012734 25013193
chr_3 g3385 g3385.t3 cds g3385.t3.CDS3 25012734 25013193
chr_3 g3385 g3385.t3 TTS g3385.t3 NA NA

Sequences

>g3385.t3 Gene=g3385 Length=945
ATGTCGAAAAAAGACGATATTGCTGAAGAAATTCCTGATTTACTCTACGATGCAAATACA
GGTATCACTTATAGAAAACTTCGATTCTTCGGAAAGGGAGGATTTGCAAAGTGTTATGAG
ATCCAGAATACTCAATCAAAAGAAACATATGCTGGCAAGATTGTCTCAAAAAAGCTCATG
ATGAAAAACAATCAAAAAGAAAAAATGACTCAAGAAATTCAAATTCACAAGTCGTTAAAT
CACAAAAATATAGTTGGCTTTAAAAGTTTTTTTGACGATTCAAATAATGTCTATATAGTT
CTGGAACTCTGCAAGAAACGTTCAATGATGGAACTTCATAAACGAAGAAAAGTGGTTACT
GATTATGAATGCCGTTACTACATTCATCAAATTGTAAGCGGAGTAAAATATCTTCATGAC
CACCATATTATTCATCGCGATCTTAAACTTGGAAATCTCTTTTTGAATGATGAATTACAT
GTTAAAATCGGTGACTTTGGTCTTGCTACTAAAATTGAATTCGAAGGAGAAAGAAAGAAG
ACTTTATGTGGGACCCCAAATTATATTGCTCCTGAGATATTGAATAAAAAAGGACATTCC
TATGAGGTTGATATTTGGTCGATTGGCTGCGTTATGTATACGCTTCTTGTTGGTCAACCT
CCATTTGAGACAAAGAGCTTAAAAGATACATATTCAAAAATTCGAAAGTGTGATTATAGA
TTGCCCTCGAACTTGCGCAAAAATGCTGCAGATATGATTATTGCTATGCTTCAATCTGAT
CCAGAAAAACGTCCAACAATTGATAAGCTATTTCATTTTGATTTCTTATCATCTGCTCCA
ATTCCCAAGTCATTACCATATTCATGTTTGACAACAGCTCCTCGTCCAGAATTACTTGAA
TATAATGATAAACGTCGCCCATTGTCGGAAATGAATGGTGGCGGT

>g3385.t3 Gene=g3385 Length=315
MSKKDDIAEEIPDLLYDANTGITYRKLRFFGKGGFAKCYEIQNTQSKETYAGKIVSKKLM
MKNNQKEKMTQEIQIHKSLNHKNIVGFKSFFDDSNNVYIVLELCKKRSMMELHKRRKVVT
DYECRYYIHQIVSGVKYLHDHHIIHRDLKLGNLFLNDELHVKIGDFGLATKIEFEGERKK
TLCGTPNYIAPEILNKKGHSYEVDIWSIGCVMYTLLVGQPPFETKSLKDTYSKIRKCDYR
LPSNLRKNAADMIIAMLQSDPEKRPTIDKLFHFDFLSSAPIPKSLPYSCLTTAPRPELLE
YNDKRRPLSEMNGGG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3385.t3 CDD cd14099 STKc_PLK 23 276 5.83028E-156
5 g3385.t3 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 10 104 7.7E-35
6 g3385.t3 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 109 282 4.7E-60
2 g3385.t3 PANTHER PTHR24345:SF57 SERINE/THREONINE-PROTEIN KINASE PLK 17 292 4.1E-126
3 g3385.t3 PANTHER PTHR24345 SERINE/THREONINE-PROTEIN KINASE PLK 17 292 4.1E-126
1 g3385.t3 Pfam PF00069 Protein kinase domain 24 275 3.4E-72
8 g3385.t3 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 143 155 -
10 g3385.t3 ProSiteProfiles PS50011 Protein kinase domain profile. 24 276 49.771
9 g3385.t3 SMART SM00220 serkin_6 24 276 8.3E-91
4 g3385.t3 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 24 293 2.83E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values