Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine/threonine-protein kinase polo.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3385 g3385.t4 TSS g3385.t4 25011855 25011855
chr_3 g3385 g3385.t4 isoform g3385.t4 25012075 25014916
chr_3 g3385 g3385.t4 exon g3385.t4.exon1 25012075 25013573
chr_3 g3385 g3385.t4 cds g3385.t4.CDS1 25013277 25013573
chr_3 g3385 g3385.t4 exon g3385.t4.exon2 25014901 25014916
chr_3 g3385 g3385.t4 cds g3385.t4.CDS2 25014901 25014915
chr_3 g3385 g3385.t4 TTS g3385.t4 25015165 25015165

Sequences

>g3385.t4 Gene=g3385 Length=1515
ATGTCGAAAAAAGACGATATTGCTGAAGAAATTCCTGATTTACTCTACGATGCAAATACA
GGTATCACTTATAGAAAACTTCGATTCTTCGGAAAGGTGAGCTAAAAGCCAATATAATTG
ATATTTCTACACAAATTCAATAACCTAAAAGAAATTCAAATTATTATGCATTAATCTAAT
GAGAATAAATTTTATTTCTTATTTTCTCATGTTAGGGAGGATTTGCAAAGTGTTATGAGA
TCCAGAATACTCAATCAAAAGAAACATATGCTGGCAAGATTGTCTCAAAAAAGCTCATGA
TGAAAAACAATCAAAAAGAAAAAATGACTCAAGAAATTCAAATTCACAAGTCGTTAAATC
ACAAAAATATAGTTGGCTTTAAAAGTTTTTTTGACGATTCAAATAATGTCTATATAGTTC
TGGAACTCTGCAAGAAACGTTCAATGATGGAACTTCATAAACGAAGAAAAGTGGTTACTG
ATTATGAATGCCGTTACTACATTCATCAAATTGTAAGCGGAGTAAAATATCTTCATGACC
ACCATATTATTCATCGCGATCTTAAACTTGGAAATCTCTTTTTGAATGATGAATTACATG
TTAAGTGAGTATATTGTATTTATATTGTATTTTATATTATAATGTATCTTTTTTAAAAGA
ATCGGTGACTTTGGTCTTGCTACTAAAATTGAATTCGAAGGAGAAAGAAAGAAGACTTTA
TGTGGGACCCCAAATTATATTGCTCCTGAGATATTGAATAAAAAAGGACATTCCTATGAG
GTTGATATTTGGTCGATTGGCTGCGTTATGTATACGCTTCTTGTTGGTCAACCTCCATTT
GAGACAAAGAGCTTAAAAGATACATATTCAAAAATTCGAAAGTGTGATTATAGATTGCCC
TCGAACTTGCGCAAAAATGCTGCAGATATGATTATTGCTATGCTTCAATCTGATCCAGAA
AAACGTCCAACAATTGATAAGCTATTTCATTTTGATTTCTTATCATCTGCTCCAATTCCC
AAGTCATTACCATATTCATGTTTGACAACAGCTCCTCGTCCAGAATTACTTGAATATAAT
GATAAACGTCGCCCATTGTCGGAAATGAATGGTGGCGGTGGTAAGTTATATATTTTTGTC
ATAAAATTCTTTTTCTTGAATTTATATATTGCTTTTTTTTCATAGATGAAACTCACACAA
ATATGTCATTCTTGAAGAATAATTTGCATGATGCTATTACAGCATCTGGAATGATGACTG
CTTCAAGTCAATTGCAGAAACAAAATTTGGAACTGCTGTATCAGCAACTGACTGAATTAT
TTGGAACAAAATTGAAACGCCATCTTGCTGATTTAGGTGATGAATACAGTGATCCAGCTT
CTAATCCACTTTTCTGGGTCAGTAAATGGGTCGATTATAGTGATAAATACGGTTTTGGAT
ATCAATTATGTGACGAAGGAATGGGAGTTATGTTTAACGATACTACAAAATTACTCATGA
TCGGAATGCTACTGA

>g3385.t4 Gene=g3385 Length=104
MSFLKNNLHDAITASGMMTASSQLQKQNLELLYQQLTELFGTKLKRHLADLGDEYSDPAS
NPLFWVSKWVDYSDKYGFGYQLCDEGMGVMFNDTTKLLMIGMLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3385.t4 CDD cd13118 POLO_box_1 62 99 0.000
5 g3385.t4 Gene3D G3DSA:3.30.1120.30 - 18 103 0.000
2 g3385.t4 PANTHER PTHR24345:SF86 SERINE/THREONINE-PROTEIN KINASE PLK1 32 99 0.000
3 g3385.t4 PANTHER PTHR24345 SERINE/THREONINE-PROTEIN KINASE PLK 32 99 0.000
1 g3385.t4 Pfam PF00659 POLO box duplicated region 73 99 0.000
6 g3385.t4 ProSiteProfiles PS50078 POLO box domain profile. 72 99 13.553
4 g3385.t4 SUPERFAMILY SSF82615 Polo-box domain 29 99 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed