Gene loci information

Transcript annotation

  • This transcript has been annotated as Unconventional myosin-IXa.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3408 g3408.t4 isoform g3408.t4 25228513 25230198
chr_3 g3408 g3408.t4 exon g3408.t4.exon1 25228513 25229045
chr_3 g3408 g3408.t4 cds g3408.t4.CDS1 25228515 25229045
chr_3 g3408 g3408.t4 exon g3408.t4.exon2 25229104 25229192
chr_3 g3408 g3408.t4 cds g3408.t4.CDS2 25229104 25229192
chr_3 g3408 g3408.t4 exon g3408.t4.exon3 25229260 25230198
chr_3 g3408 g3408.t4 cds g3408.t4.CDS3 25229260 25230139
chr_3 g3408 g3408.t4 TSS g3408.t4 NA NA
chr_3 g3408 g3408.t4 TTS g3408.t4 NA NA

Sequences

>g3408.t4 Gene=g3408 Length=1561
GCAAAGCTGCTGCTCTATTGGGTACAATATCGGAAACGAACAAGCATGGCAAGAAAGAGA
TGACAGATATTCTAAGTAAAAATAAACGAACGAAAAATAATATGAGTGAAGAGATGACGA
GTGGATCATACATAGCATCAAAAGCAAATAAATTAGACGCAACATTATCGCGAAGAAACT
CAGATCCAGCTAATAAAATTTCTTTATTAGAAACGAATCGTGGTAATGATTTGTATCAAT
CAAGCACAAATATTAATATTGGTGGTCATCGATTCCGTAAAGTTACGCGAATAAATAAGA
GTGAGCGATGTGCAAGCTGTGACGAGAGTGATTCATTTATATCAGAAGGTCACCGATGCC
TCGACTGTAAAATCTTAGTACACACGAAATGTATTCAAAACGGTGGAATTAAAAGTATTA
AGTGTGGTGCAAAACGATCAACAAAGCGAACGAAAAAAGTTAGTGAGCGCGAAAAAATTA
GTTCAGGTGCTGCAACAACACCTAATTCGAAATTTAGCGGCACAAAAGAGTACACAGATT
CGACCGACAAGATCATAAGTGACGCAAAAGAACTTCAACTAATGCAGGATTTTATTACAC
AGAAAATTTGTAAAATGGAAGGTGATAAGGTGTCTGAGGTTGATCGTGTATTCAAGCAAG
CACTGAGAGAATTCAAAGATAATCTGGTTGCACAATATAGTGTAGCTCATAAACAAAACA
GCGATTCTTTGAATATCAAATATCGAGATTTAATTGCCAATTTTGAACAAGTCATAGAAA
CAGCATGCGGCAAAACAGATGATTTTCCGAAAACAATGGGCGTAAATGCTTTCCGTGGCT
TTATGAATGAATTTATGAATTCTCGAGAGGCTGATAAGCCCAAAATGAAAAGAAAAAAGG
ATAAAAAGAGGAAAGCTGATGAACTTGTGCTCTTTAATGGTCATGTGTTCCAATTGACAA
TCATGAATATTGCTACAGTTTGTGAAAATTGCCAACAATTTTTACTTTGGCCAATTGAAC
GTGGACTAGTCTGTATAAATTGTTCATTTACTGTTCATAAAAAATGTCACTTAAAAGCAC
CAATGTGCAGTAAACCAACAAGTGCAAGTGGAAATGGAGAAGGTGGAAATAATGAGGGTG
GAAAACTTTTTAAAGTACCATTAACACAACTTTGTGCTTCAGAAGGCAATGGAACAAAAA
TACCAATTCGAATTGATCAGTTAATTACTAAAATTGAAATGCATGGACTATATGCAGAAG
GTTTATATAGGAAAAGTGGATTGTCTTCGAAAATCAAAGAATTACAGAAAAAAATGAATG
AGCCAAGTAATAGTGAAATAGATTATGAATCATATAATGTACACGTCCTTACAAATGTTC
TTAAAACCTTTCTTCGTGACTTGCCAGAACCCTTGCTTACATTTGATCGTTATGACGACT
TTTTACGAGCCGCCGATTTGTCAGATGAGTCTGATCGTGTTCAAACACTATTGTCATTAA
TTAAAAAACTACCTCCTGCCCATCATGCACTTCTCGAGCGAATTGTTTTTCATTTAGCTC
G

>g3408.t4 Gene=g3408 Length=500
MTDILSKNKRTKNNMSEEMTSGSYIASKANKLDATLSRRNSDPANKISLLETNRGNDLYQ
SSTNINIGGHRFRKVTRINKSERCASCDESDSFISEGHRCLDCKILVHTKCIQNGGIKSI
KCGAKRSTKRTKKVSEREKISSGAATTPNSKFSGTKEYTDSTDKIISDAKELQLMQDFIT
QKICKMEGDKVSEVDRVFKQALREFKDNLVAQYSVAHKQNSDSLNIKYRDLIANFEQVIE
TACGKTDDFPKTMGVNAFRGFMNEFMNSREADKPKMKRKKDKKRKADELVLFNGHVFQLT
IMNIATVCENCQQFLLWPIERGLVCINCSFTVHKKCHLKAPMCSKPTSASGNGEGGNNEG
GKLFKVPLTQLCASEGNGTKIPIRIDQLITKIEMHGLYAEGLYRKSGLSSKIKELQKKMN
EPSNSEIDYESYNVHVLTNVLKTFLRDLPEPLLTFDRYDDFLRAADLSDESDRVQTLLSL
IKKLPPAHHALLERIVFHLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g3408.t4 Gene3D G3DSA:3.30.60.20 - 56 136 1.6E-7
8 g3408.t4 Gene3D G3DSA:3.30.60.20 - 279 355 5.8E-13
10 g3408.t4 Gene3D G3DSA:1.10.555.10 - 356 500 3.5E-43
16 g3408.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 22 -
15 g3408.t4 MobiDBLite mobidb-lite consensus disorder prediction 131 152 -
3 g3408.t4 PANTHER PTHR46184:SF4 UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN 152 500 3.6E-102
4 g3408.t4 PANTHER PTHR46184 UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN 152 500 3.6E-102
2 g3408.t4 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 295 345 3.8E-7
1 g3408.t4 Pfam PF00620 RhoGAP domain 382 499 3.2E-32
11 g3408.t4 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 295 343 -
18 g3408.t4 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 69 122 9.484
19 g3408.t4 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 294 343 11.453
17 g3408.t4 ProSiteProfiles PS50238 Rho GTPase-activating proteins domain profile. 366 500 35.315
12 g3408.t4 SMART SM00109 c1_12 70 122 1.9E-4
13 g3408.t4 SMART SM00109 c1_12 293 343 1.5E-4
14 g3408.t4 SMART SM00324 RhoGAP_3 379 500 4.1E-19
6 g3408.t4 SUPERFAMILY SSF57889 Cysteine-rich domain 64 114 4.04E-8
5 g3408.t4 SUPERFAMILY SSF57889 Cysteine-rich domain 281 344 4.49E-14
7 g3408.t4 SUPERFAMILY SSF48350 GTPase activation domain, GAP 360 499 1.92E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values