Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Unconventional myosin-IXa.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3408 g3408.t6 isoform g3408.t6 25236121 25240468
chr_3 g3408 g3408.t6 exon g3408.t6.exon1 25236121 25236709
chr_3 g3408 g3408.t6 cds g3408.t6.CDS1 25236122 25236709
chr_3 g3408 g3408.t6 exon g3408.t6.exon2 25238286 25238592
chr_3 g3408 g3408.t6 cds g3408.t6.CDS2 25238286 25238330
chr_3 g3408 g3408.t6 exon g3408.t6.exon3 25240320 25240468
chr_3 g3408 g3408.t6 TSS g3408.t6 25240447 25240447
chr_3 g3408 g3408.t6 TTS g3408.t6 NA NA

Sequences

>g3408.t6 Gene=g3408 Length=1045
GTAGAAGTTGAGAAAAATTATTAGGAGCTTCATTTTTTTCTATAAAAATATTCAGTAAAA
CTTATTTATCTTAAGAATTTAGACAAATAGTTCATTTGAATAGCTATAAATTGAAATAAC
AACTACGTTTTGTGCATAAAAGATAATTGTGCATTATATTTTTGCTTTTCGTTATCAATT
GTGATCTTTATTTTTTCGAAACAAATAAAGACAAAAATCAAAATAAACGTTGCTGTACGA
AACAATCAAATCGAGAGCTAAGAAAGATTGCAGCTCTTTGTAAAAAATTTATTAAATTTT
AGTGAAAAAAATCTAAAAGAAAAGTGAGATAAATTAACCTAAATTAAAATTAAAAAATGT
TGGATCATCGTATAGTGAAGGGATCAAATTAAAGATTGGATAAAGTATAACATGCATTCG
CAGGATACAAATGAAAACTCGAGATATGTGCTACAGGTTTATGTTGGAGCTTTGTCAGTG
CATTATGAAGCGTTGAGTGTAGAAGCTTCAAAGCAAACTTCAGCTGAGGAGATTGTAACG
TGCATTGCAGAGCGATTAGGATTGACAGGAAATAATTATGAGTTAGCGGAAGTCATTGGA
AATTGTAAGGAGCGACGATTATCGTCACACGAGAAGCCCGTATCACTAAAGCTGCTCTGG
CCAAAACATTCTGATCCGAATTTTGGACGATTTTATTTGCGCGAAAAACAGACCAATGAA
CCAACTTGGTATGGTTTTGATCCGCAAGTTTTGAAAGAGTTTCTCTCCCAGCCAGAAAAT
CGTGAATATCCTGACTTGTGCCAACTACCTGATTTAAATGAATCCACTCTTCTGGAGAAT
CTCAGACAACGCTTTGAAGCAGGACATATATACACTTATGTCGGATCAATACTCATTGCA
GTTAATCCATTTAGATTTTTACCTATCTATAATCCAAAATATGTGCGACTTTATCAAAAT
CAACGTATTGGTCTTTTATTACCCCCACACATTTTTGCCATTGCCGATAATGCTTATTAC
TGCATGCTAAAAGAAAAGCGTAATC

>g3408.t6 Gene=g3408 Length=211
MHSQDTNENSRYVLQVYVGALSVHYEALSVEASKQTSAEEIVTCIAERLGLTGNNYELAE
VIGNCKERRLSSHEKPVSLKLLWPKHSDPNFGRFYLREKQTNEPTWYGFDPQVLKEFLSQ
PENREYPDLCQLPDLNESTLLENLRQRFEAGHIYTYVGSILIAVNPFRFLPIYNPKYVRL
YQNQRIGLLLPPHIFAIADNAYYCMLKEKRN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g3408.t6 Gene3D G3DSA:3.10.20.90 - 1 108 4.6E-11
9 g3408.t6 Gene3D G3DSA:3.40.850.10 Kinesin 109 211 9.3E-33
3 g3408.t6 PANTHER PTHR46184 UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN 4 211 1.6E-63
2 g3408.t6 Pfam PF00788 Ras association (RalGDS/AF-6) domain 11 100 7.6E-12
1 g3408.t6 Pfam PF00063 Myosin head (motor domain) 127 211 1.3E-25
11 g3408.t6 ProSiteProfiles PS50200 Ras-associating (RA) domain profile. 10 101 18.437
10 g3408.t6 ProSiteProfiles PS51456 Myosin motor domain profile. 124 211 42.444
7 g3408.t6 SMART SM00314 RA_5 10 101 6.4E-11
5 g3408.t6 SUPERFAMILY SSF54236 Ubiquitin-like 12 100 9.3E-11
6 g3408.t6 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 118 211 2.12E-29
4 g3408.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 150 172 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0005524 ATP binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values