Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase 1, isoform C.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3418 g3418.t22 isoform g3418.t22 25262959 25264673
chr_3 g3418 g3418.t22 exon g3418.t22.exon1 25262959 25262986
chr_3 g3418 g3418.t22 exon g3418.t22.exon2 25263105 25263172
chr_3 g3418 g3418.t22 cds g3418.t22.CDS1 25263151 25263172
chr_3 g3418 g3418.t22 exon g3418.t22.exon3 25263250 25263265
chr_3 g3418 g3418.t22 cds g3418.t22.CDS2 25263250 25263265
chr_3 g3418 g3418.t22 exon g3418.t22.exon4 25263334 25263430
chr_3 g3418 g3418.t22 cds g3418.t22.CDS3 25263334 25263430
chr_3 g3418 g3418.t22 exon g3418.t22.exon5 25264185 25264673
chr_3 g3418 g3418.t22 cds g3418.t22.CDS4 25264185 25264673
chr_3 g3418 g3418.t22 TTS g3418.t22 25264797 25264797
chr_3 g3418 g3418.t22 TSS g3418.t22 NA NA

Sequences

>g3418.t22 Gene=g3418 Length=698
GTTCGGAGGCTTTCCAAGCAATTCAAAGTATTACTTTAGTGTCTAAATAATCACTTTTCA
AATCAAGATCAAAAATGGATTTCTACTATATGCCAGGAAGTGCTCCATGCAGAGCCGTTC
AAATGACAGCTGCAGCTGTAGGTGCTGAATTAAACCTTAAGTTCCTCAATTTGATGGCCG
GCGAACACATGAAACCAGATTTTTTAGCAATCAATCCTCAACACACTATTCCAACTTTGG
TTGACAATGGATTTGGTCTTTGGGAATCACGTGCTATTTGCACATATTTGATCGAGAAAT
ACGGAAAGGAAAGTCTTTTCCCAAAAGATCCAAAGACTCGTGCAATTATAAATCAACGTT
TATACTTTGATATGGGCACGCTCTATCAAAAATTTGCCGACTACTACTATCCACAATTGT
TTGCTAAGGCACCAGCAGATCCAGAAAAATTCAAAGCAATGGAAACTGCCATGGGATTTT
TCAATACATTTTTGGAAGGAAATAAATATGCTGCCGGAAATGATCTTACTGTTGCAGACA
TTTGTTTGGTTGCAACCATTTCCACTTATGATGCTGCCGGTTTCGATTTGAGCAAATTCC
CAAATGTTGCAAAATGGTTCGAATTGTGCAAAAAAACTGTTCCTGGCTATGCAATCAATC
AGGCTGGTGTTGATGAATTCAAGAAATTCTTCAATTAA

>g3418.t22 Gene=g3418 Length=207
MDFYYMPGSAPCRAVQMTAAAVGAELNLKFLNLMAGEHMKPDFLAINPQHTIPTLVDNGF
GLWESRAICTYLIEKYGKESLFPKDPKTRAIINQRLYFDMGTLYQKFADYYYPQLFAKAP
ADPEKFKAMETAMGFFNTFLEGNKYAAGNDLTVADICLVATISTYDAAGFDLSKFPNVAK
WFELCKKTVPGYAINQAGVDEFKKFFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3418.t22 CDD cd03045 GST_N_Delta_Epsilon 1 74 0.000
11 g3418.t22 CDD cd03177 GST_C_Delta_Epsilon 87 203 0.000
8 g3418.t22 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 77 0.000
7 g3418.t22 Gene3D G3DSA:1.20.1050.10 - 78 207 0.000
3 g3418.t22 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 206 0.000
4 g3418.t22 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 206 0.000
2 g3418.t22 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 79 0.000
1 g3418.t22 Pfam PF00043 Glutathione S-transferase, C-terminal domain 116 183 0.000
10 g3418.t22 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 80 22.211
9 g3418.t22 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 85 206 23.466
13 g3418.t22 SFLD SFLDG01153 Main.4: Theta-like 1 206 0.000
14 g3418.t22 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 206 0.000
5 g3418.t22 SUPERFAMILY SSF52833 Thioredoxin-like 1 89 0.000
6 g3418.t22 SUPERFAMILY SSF47616 GST C-terminal domain-like 84 192 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values