Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3425 g3425.t11 TTS g3425.t11 25307620 25307620
chr_3 g3425 g3425.t11 isoform g3425.t11 25307703 25308886
chr_3 g3425 g3425.t11 exon g3425.t11.exon1 25307703 25307782
chr_3 g3425 g3425.t11 cds g3425.t11.CDS1 25307703 25307782
chr_3 g3425 g3425.t11 exon g3425.t11.exon2 25307873 25307956
chr_3 g3425 g3425.t11 cds g3425.t11.CDS2 25307873 25307956
chr_3 g3425 g3425.t11 exon g3425.t11.exon3 25308036 25308327
chr_3 g3425 g3425.t11 cds g3425.t11.CDS3 25308036 25308225
chr_3 g3425 g3425.t11 exon g3425.t11.exon4 25308384 25308504
chr_3 g3425 g3425.t11 exon g3425.t11.exon5 25308573 25308775
chr_3 g3425 g3425.t11 exon g3425.t11.exon6 25308819 25308886
chr_3 g3425 g3425.t11 TSS g3425.t11 25308935 25308935

Sequences

>g3425.t11 Gene=g3425 Length=848
ATGGAAAAGTTTTTACTTTTATTAACAATTATTTTATTTTTTGCTGTTATCTTAGAAGTG
AGTGAAAGGCTGGTGTAACACATGTGCTACCTAATCAATTGCCATTATTCGAAAGAAAAG
TGCAAGGAAGAATTGTCGGTGGTTCGCGACCAAGTACAACTCAATTTCCCTATACAGTGT
CAGTTCGCGCATTTAATGGAACATCAACCTCGTTTTGCGGTGGTTCTATAATTTCTTACA
ATTTTGTTCTGACTGCTGCACATTGCACTCGTGGCTATCAAGATTTCGAAATTGGTGTAG
GCTCAATAGTTCTTCAAACTCCATTTTTTAAAATACTAACTTATGGTGGAGCAATAGAAC
ATCCATATTTTAATCCAACAAATTTAAATAATGACATTTCACTCATAGAAGTTCCAACTA
TTGCCCAAAATGTTCCGTCTGTTGTTCCAGTTTTACTTCCTAAAAGATCACAAGCCGATA
AACCTTTTATTGGAATGCAAGTGACAGTATCAGGATTTGGAAGAACATCGGACGCATCAC
AAAGTGTTTCACCATTCATGGAATATGTTCAACTAAAAATTATCTCTAATAAAGATTGTG
CAGGAACATATGGTAGAAGAATTGTTACTGATGATGTTATTTGTGCTAAGGGAATTGATA
AAAACTTTAATGCTTGTATTGGAGGAGGTCCTTTAACAATGAAAGAAGCAGGAAATCATG
TTCAACTTGGTATTGTGTCTTTTGTTAGTTCAAGAGGCTGTGCTATTGGTGATCCTTCAG
GTTATACAAAAGTAGGAAAATATCTCGATTGGATTTCTGCCAAAACTGGAATAATAATTC
GCAATTAA

>g3425.t11 Gene=g3425 Length=117
MQVTVSGFGRTSDASQSVSPFMEYVQLKIISNKDCAGTYGRRIVTDDVICAKGIDKNFNA
CIGGGPLTMKEAGNHVQLGIVSFVSSRGCAIGDPSGYTKVGKYLDWISAKTGIIIRN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g3425.t11 Gene3D G3DSA:2.40.10.10 - 1 109 0.000
2 g3425.t11 PANTHER PTHR24250:SF56 SERINE PROTEASE P96 3 111 0.000
3 g3425.t11 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 3 111 0.000
1 g3425.t11 Pfam PF00089 Trypsin 2 107 0.000
6 g3425.t11 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 112 11.599
4 g3425.t11 SUPERFAMILY SSF50494 Trypsin-like serine proteases 2 112 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed