Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3425 g3425.t7 TTS g3425.t7 25307620 25307620
chr_3 g3425 g3425.t7 isoform g3425.t7 25307703 25308886
chr_3 g3425 g3425.t7 exon g3425.t7.exon1 25307703 25307782
chr_3 g3425 g3425.t7 cds g3425.t7.CDS1 25307703 25307782
chr_3 g3425 g3425.t7 exon g3425.t7.exon2 25307882 25307962
chr_3 g3425 g3425.t7 cds g3425.t7.CDS2 25307882 25307962
chr_3 g3425 g3425.t7 exon g3425.t7.exon3 25308036 25308327
chr_3 g3425 g3425.t7 cds g3425.t7.CDS3 25308036 25308327
chr_3 g3425 g3425.t7 exon g3425.t7.exon4 25308384 25308504
chr_3 g3425 g3425.t7 cds g3425.t7.CDS4 25308384 25308504
chr_3 g3425 g3425.t7 exon g3425.t7.exon5 25308573 25308775
chr_3 g3425 g3425.t7 cds g3425.t7.CDS5 25308573 25308775
chr_3 g3425 g3425.t7 exon g3425.t7.exon6 25308830 25308886
chr_3 g3425 g3425.t7 cds g3425.t7.CDS6 25308830 25308886
chr_3 g3425 g3425.t7 TSS g3425.t7 25308935 25308935

Sequences

>g3425.t7 Gene=g3425 Length=834
ATGGAAAAGTTTTTACTTTTATTAACAATTATTTTATTTTTTGCTGTTATCTTAGAAGCT
GGTGTAACACATGTGCTACCTAATCAATTGCCATTATTCGAAAGAAAAGTGCAAGGAAGA
ATTGTCGGTGGTTCGCGACCAAGTACAACTCAATTTCCCTATACAGTGTCAGTTCGCGCA
TTTAATGGAACATCAACCTCGTTTTGCGGTGGTTCTATAATTTCTTACAATTTTGTTCTG
ACTGCTGCACATTGCACTCGTGGCTATCAAGATTTCGAAATTGGTGTAGGCTCAATAGTT
CTTCAAACTCCATTTTTTAAAATACTAACTTATGGTGGAGCAATAGAACATCCATATTTT
AATCCAACAAATTTAAATAATGACATTTCACTCATAGAAGTTCCAACTATTGCCCAAAAT
GTTCCGTCTGTTGTTCCAGTTTTACTTCCTAAAAGATCACAAGCCGATAAACCTTTTATT
GGAATGCAAGTGACAGTATCAGGATTTGGAAGAACATCGGACGCATCACAAAGTGTTTCA
CCATTCATGGAATATGTTCAACTAAAAATTATCTCTAATAAAGATTGTGCAGGAACATAT
GGTAGAAGAATTGTTACTGATGATGTTATTTGTGCTAAGGGAATTGATAAAAACTTTAAT
GCTTGTATTGGAGATTCAGGAGGTCCTTTAACAATGAAAGAAGCAGGAAATCATGTTCAA
CTTGGTATTGTGTCTTTTGTTAGTTCAAGAGGCTGTGATCCTTCAGGTTATACAAAAGTA
GGAAAATATCTCGATTGGATTTCTGCCAAAACTGGAATAATAATTCGCAATTAA

>g3425.t7 Gene=g3425 Length=277
MEKFLLLLTIILFFAVILEAGVTHVLPNQLPLFERKVQGRIVGGSRPSTTQFPYTVSVRA
FNGTSTSFCGGSIISYNFVLTAAHCTRGYQDFEIGVGSIVLQTPFFKILTYGGAIEHPYF
NPTNLNNDISLIEVPTIAQNVPSVVPVLLPKRSQADKPFIGMQVTVSGFGRTSDASQSVS
PFMEYVQLKIISNKDCAGTYGRRIVTDDVICAKGIDKNFNACIGDSGGPLTMKEAGNHVQ
LGIVSFVSSRGCDPSGYTKVGKYLDWISAKTGIIIRN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g3425.t7 CDD cd00190 Tryp_SPc 41 268 1.5524E-60
9 g3425.t7 Gene3D G3DSA:2.40.10.10 - 33 272 3.5E-56
2 g3425.t7 PANTHER PTHR24260 - 35 273 1.5E-59
3 g3425.t7 PANTHER PTHR24260:SF90 AT07769P-RELATED 35 273 1.5E-59
6 g3425.t7 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 70 85 1.5E-11
5 g3425.t7 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 124 138 1.5E-11
4 g3425.t7 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 219 231 1.5E-11
1 g3425.t7 Pfam PF00089 Trypsin 41 267 1.9E-44
11 g3425.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
12 g3425.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
13 g3425.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
14 g3425.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
10 g3425.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 277 -
18 g3425.t7 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 80 85 -
19 g3425.t7 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 220 231 -
20 g3425.t7 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 41 272 25.932
17 g3425.t7 SMART SM00020 trypsin_2 40 267 2.5E-52
7 g3425.t7 SUPERFAMILY SSF50494 Trypsin-like serine proteases 4 272 3.17E-63
8 g3425.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -
16 g3425.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed