General information for g3438.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase I.
Parent gene
- The parent gene g3438 is located on chr_3: 25451650..25452253 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3438 | g3438.t6 | TSS | g3438.t6 | 25451398 | 25451398 |
| chr_3 | g3438 | g3438.t6 | isoform | g3438.t6 | 25451650 | 25452253 |
| chr_3 | g3438 | g3438.t6 | exon | g3438.t6.exon1 | 25451650 | 25451906 |
| chr_3 | g3438 | g3438.t6 | cds | g3438.t6.CDS1 | 25451755 | 25451906 |
| chr_3 | g3438 | g3438.t6 | exon | g3438.t6.exon2 | 25451971 | 25452253 |
| chr_3 | g3438 | g3438.t6 | cds | g3438.t6.CDS2 | 25451971 | 25452253 |
| chr_3 | g3438 | g3438.t6 | TTS | g3438.t6 | 25452335 | 25452335 |
Sequences
>g3438.t6 Gene=g3438 Length=540
GATCCACATTGGAGTAAACCTCGCGGAGTGGAACAAAGAAACGAAGCACTTAAGTGGATA
AGAAAGAAAATTAAACATGAGCCAGGTCATTCGATTGTTTATTTCATGGATGATGATAAC
TCTTATAGTACAGAATTATTTGAAGAAATGTCTAAGATTGAACGTATGAGAGTAGGTGTA
TGGCCTGTGGGTCTAGTTGGTGCAATGAAAGTTGAGAAACCAATTGTTGAAAATGATAAA
GTTGTCGGATTCAACAGCGTTTGGCGACCAGAGCGACCATTTCCAATAGATATGGCTGGT
TTTGCGATAAGTAGTGATTTATTTGAAGCGAATCCTAGCGCTCAATTTAACTATGAAGTA
GAAAAGGGATATCAAGAAAGTGAAATATTAAGACAAGTAACTACACGTGAGAAACTTCAA
CCTATTGCATCAAATCAAATTTTAGTTTGGCATACAAGAACAGAAGCATCAAAAATGGAT
AATGAGATTAAATTAGGCAAAAAAGGACTACCTCCTAGCGATGAAGGGATGATCATTTAG
>g3438.t6 Gene=g3438 Length=144
MDDDNSYSTELFEEMSKIERMRVGVWPVGLVGAMKVEKPIVENDKVVGFNSVWRPERPFP
IDMAGFAISSDLFEANPSAQFNYEVEKGYQESEILRQVTTREKLQPIASNQILVWHTRTE
ASKMDNEIKLGKKGLPPSDEGMII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3438.t6 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 143 | 0 |
| 2 | g3438.t6 | PANTHER | PTHR10896 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE | 2 | 135 | 0 |
| 3 | g3438.t6 | PANTHER | PTHR10896:SF9 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE 3 | 2 | 135 | 0 |
| 1 | g3438.t6 | Pfam | PF03360 | Glycosyltransferase family 43 | 1 | 120 | 0 |
| 4 | g3438.t6 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 1 | 127 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
