General information for g345.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g345 is located on chr_3: 2807485..2809329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g345 | g345.t2 | isoform | g345.t2 | 2806608 | 2807476 |
| chr_3 | g345 | g345.t2 | exon | g345.t2.exon1 | 2806608 | 2807476 |
| chr_3 | g345 | g345.t2 | TTS | g345.t2 | 2806613 | 2806613 |
| chr_3 | g345 | g345.t2 | cds | g345.t2.CDS1 | 2806952 | 2807164 |
| chr_3 | g345 | g345.t2 | TSS | g345.t2 | NA | NA |
Sequences
>g345.t2 Gene=g345 Length=869
TTTGTAAATGCAGCAGATTCGGGTGAATGGACAGCAGCTTCAATTGCTCTTTTAAATTCA
AGAGGCATTCGGTCAACTTTATCACGTGGTGACATCAATTATGCTGATTTAGTTTCTGTG
CTACCTTTTGAAAATTATTATAATATTATTGAAATACCTGGCTCAACATTAAGAGAAGCT
TTGGAATTTTCTGTCTCTAATTCTAGTACGCTTGCAATTTTTCAAGTCTCAGGGATAAAA
GTTACTTTTGACTTAAAAAGAAAACCATATGATCGAATTGTTGAATTAAAAGTTTTATGT
CAAGACTGTTTGATGCCAAAATATGAAGATATTGATAAATCAAAAGATTATCGTGTTGTG
ATTTCAAATTATATAGCAGAAGGTGGAGATGGCTATACAATGTTTCCTGCAGCTACAAGC
TATACAGTGATAGGAATGAGAGACATTGATGTACTTTCAGAATATATAAAAAAATATTCT
CCAATAACTAAACCACTCATTCAGTCAAGGATTAAATTTTTGTGAAAACCATGGGAATAA
TGAAAGAATCTCATACATGGCTAAATTATAAAATAAAAATTACTTTCCTTTAATATTTAT
TAAATTATGGATTTAGACAGTTTTTGCTCGAAATGAAACAATTGTAAAATAGAGACTAGT
GAAGATGTTCAACAGGTTTTTGTCAGCTGTTTGTGATGAAATTAAGAAGAAATAGTCTGT
AACAGTAAGACAAATACAAATAACCCATCTAACTCGTTTTTATCAATGATTTTCTTAACC
TTGATTTTTTCTGTCTGCTTCGATGTGACAATTTTAAAATGAATAATATTTTTATGCAAT
AAAAATTTTATTAAAATTCGTTATAAAAA
>g345.t2 Gene=g345 Length=70
MPKYEDIDKSKDYRVVISNYIAEGGDGYTMFPAATSYTVIGMRDIDVLSEYIKKYSPITK
PLIQSRIKFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g345.t2 | Gene3D | G3DSA:3.90.780.10 | - | 1 | 70 | 0e+00 |
| 2 | g345.t2 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 1 | 68 | 0e+00 |
| 3 | g345.t2 | PANTHER | PTHR11575:SF32 | APYRASE-LIKE PROTEIN | 1 | 68 | 0e+00 |
| 1 | g345.t2 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 2 | 32 | 3e-07 |
| 4 | g345.t2 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 3 | 63 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed