General information for g345.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Apyrase.
Parent gene
- The parent gene g345 is located on chr_3: 2807485..2809329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g345 | g345.t4 | TTS | g345.t4 | 2806613 | 2806613 |
| chr_3 | g345 | g345.t4 | isoform | g345.t4 | 2807485 | 2808415 |
| chr_3 | g345 | g345.t4 | exon | g345.t4.exon1 | 2807485 | 2808280 |
| chr_3 | g345 | g345.t4 | cds | g345.t4.CDS1 | 2807492 | 2808280 |
| chr_3 | g345 | g345.t4 | exon | g345.t4.exon2 | 2808342 | 2808415 |
| chr_3 | g345 | g345.t4 | cds | g345.t4.CDS2 | 2808342 | 2808344 |
| chr_3 | g345 | g345.t4 | TSS | g345.t4 | 2808694 | 2808694 |
Sequences
>g345.t4 Gene=g345 Length=870
GTACACTTTGGTACACCTTATTTAAATGGAATGTCACGCAATATTTGTTGAATTTGGAAC
CAGCTGATGTTATGACAATTGGAAATCATGAGTTTGATCACGGTATTGATGGATTAGTAC
CATTTTTGGATCATATAAAAACACCTGTTGTTGTGTGTAATTTTGATGACTCATCTGAAC
CAAAAATGCAAGGAAAATATACAAAATCAATTGTGTTAGAAAAAAATGGAAAGAAAATTG
GAGTCGTTGGTGTAACAACAACTCTTGCTACAGGAAATCGAGGAAAATTAAAAATTTTAC
CAGAAGTCGAAAATGTTAAAAAAGAGGTTGACAACTTAGTCGAGAAAAGAATAAAAATTA
TCATCGTTCTCTCACATTCTGGCCTTGAAGTTGATCGTGAGATTGCAAAACATGGTGGAG
ATATTGATATAATTGTTGGTGGTCATTCTCACTCATTTCTTTACTCTGGAACTCCTTCAA
TTGGACCAGACACACCTGTAAGTGACTATCCAACAATTGAAGAGCAAGAAAATGGTAGAA
AAGTTCTAATAGTTCAAGCATCTGCTTATGCAAAATATCTTGGAAATATTACACTCTATT
TTGATGAAGATGGTGAAATTAAACACTATGAAGGTGCACCAATATTTTTGTCACATGATA
TCGAGCAAGATCCTGAGATTATTAACAAATTAAAACCATGGAAAGAAGAACTTGATAAAT
ATCAGAGCATGAAAATTGGATCAATAAATTTCTCACTTGATTTTTCATGTTTAGAACAAG
AATGTGGAATTGGAAATTTAATAACTGATGCAATGGTTGATTCTGTAAGTTATTCTTCTT
TTAAAAAAGGTTTTGGTTTTTAATTTTATT
>g345.t4 Gene=g345 Length=263
MTIGNHEFDHGIDGLVPFLDHIKTPVVVCNFDDSSEPKMQGKYTKSIVLEKNGKKIGVVG
VTTTLATGNRGKLKILPEVENVKKEVDNLVEKRIKIIIVLSHSGLEVDREIAKHGGDIDI
IVGGHSHSFLYSGTPSIGPDTPVSDYPTIEEQENGRKVLIVQASAYAKYLGNITLYFDED
GEIKHYEGAPIFLSHDIEQDPEIINKLKPWKEELDKYQSMKIGSINFSLDFSCLEQECGI
GNLITDAMVDSVSYSSFKKGFGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g345.t4 | Gene3D | G3DSA:3.60.21.10 | - | 1 | 247 | 0.0e+00 |
| 2 | g345.t4 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 1 | 251 | 0.0e+00 |
| 3 | g345.t4 | PANTHER | PTHR11575:SF32 | APYRASE-LIKE PROTEIN | 1 | 251 | 0.0e+00 |
| 6 | g345.t4 | PRINTS | PR01607 | Apyrase family signature | 92 | 109 | 0.0e+00 |
| 5 | g345.t4 | PRINTS | PR01607 | Apyrase family signature | 111 | 134 | 0.0e+00 |
| 4 | g345.t4 | PRINTS | PR01607 | Apyrase family signature | 158 | 178 | 0.0e+00 |
| 1 | g345.t4 | Pfam | PF00149 | Calcineurin-like phosphoesterase | 1 | 128 | 2.2e-05 |
| 7 | g345.t4 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 1 | 216 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
