General information for g3453.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3453 is located on chr_3: 25510631..25511863 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3453 | g3453.t1 | isoform | g3453.t1 | 25510631 | 25511863 |
| chr_3 | g3453 | g3453.t1 | exon | g3453.t1.exon1 | 25510631 | 25511863 |
| chr_3 | g3453 | g3453.t1 | cds | g3453.t1.CDS1 | 25510631 | 25511863 |
| chr_3 | g3453 | g3453.t1 | TSS | g3453.t1 | NA | NA |
| chr_3 | g3453 | g3453.t1 | TTS | g3453.t1 | NA | NA |
Sequences
>g3453.t1 Gene=g3453 Length=1233
ATGGTTCATGAAAATCGCAAAACCTTAGCTGAGCGCCCAACCACTGATAGCGATTCGGAT
CAACCTAATTTGCGTAACTATCGCATTCCACGTTTATCGAGAGTTGAAGTTCCTACAGCT
GATCCTGCGCCTGTAGACAACGTCTCGCATAACCGCGATCGCTCTCGCATTAGAGATCGT
TCCCATAACAGAGAATCATCTCGTCGCTCTCGTTATCATGCTGGCTCTCCTCGCTCACGC
AACAATGAACGGTCTTCGCATTCCAGTCAAAACAATAGCTCATCATACTCAGGTCGGCAA
TCACCGAATCGTCGCCGTCGAGCTGATTTACATTCTCGTCTTGGTCCTCCATTACGAGCT
CAACGTAGCAACGCTTCACATCGTTCACCAGTTCGATATCCAGTTGACAATCGTGTCAAC
CACAATCACAATCGTCGTCGTTCCATCGACCGTCGCAATCCACATCGACAACACATTGCT
TCGCCAGTGATGCAGAATGCTGGTGCTAATCCACCTGACCCACAAGTAGTTCGTGTAGTT
CAACCGCTTAATACACAAGTTTTAAAATTCACAGAGGTTCCAACTTCAGTCTCATTGATT
GAGTTTTTAAATGGATTAAGCCGTTGGATGCGTGGAGTCACAGGTGCAACGCGTGAATTT
AATTACGAATCTGGTGAAGCTGGAAAGTCAATTTTCGTTTATGCTGTTGTTCAAGATGAA
ATTGATGTTGCTGTTGATACATTTTTCTCGTTCAATTTCTCGACTGGAGCGCAACAAATC
AAACCAATTTTGTTATCATGCGCAATCACTTCCATTGTTGCCGCGGATGTTTCCGATTCA
TCCATTTCCTTAATTCCTACTATTATGCTGCGTAATTTAGTACCTATCACAACTCGACAC
GCAATAGCGGCCGCCATTGACGCTGCTGAGATCGTTTCACAAACTGAGACAGTGGTTACT
CACGTTAGAGTTCCTGCCAAGGATCTTGGACTTGCCAAGACCTCAGCAATTGCATTTATT
GGCGTATCACAACAAGCTCGAGTTGTTGAACTCGATGGTTTTACAAGCGAACGCTTAGCG
AAACGTGTTCCATTCACTCGAAGCTTCCAAGCTCCAGTTCTCATTCCTAAAGGCATGGCA
AATGGTGTACATGATCAGGAGTGGTCTACTCGTGCAGCAAGAATCAACATGCTCATCAAG
CACAACCCCTTCGAACAGGGAAGAGGCCAATGA
>g3453.t1 Gene=g3453 Length=410
MVHENRKTLAERPTTDSDSDQPNLRNYRIPRLSRVEVPTADPAPVDNVSHNRDRSRIRDR
SHNRESSRRSRYHAGSPRSRNNERSSHSSQNNSSSYSGRQSPNRRRRADLHSRLGPPLRA
QRSNASHRSPVRYPVDNRVNHNHNRRRSIDRRNPHRQHIASPVMQNAGANPPDPQVVRVV
QPLNTQVLKFTEVPTSVSLIEFLNGLSRWMRGVTGATREFNYESGEAGKSIFVYAVVQDE
IDVAVDTFFSFNFSTGAQQIKPILLSCAITSIVAADVSDSSISLIPTIMLRNLVPITTRH
AIAAAIDAAEIVSQTETVVTHVRVPAKDLGLAKTSAIAFIGVSQQARVVELDGFTSERLA
KRVPFTRSFQAPVLIPKGMANGVHDQEWSTRAARINMLIKHNPFEQGRGQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g3453.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 155 | - |
| 2 | g3453.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 80 | - |
| 1 | g3453.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 101 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
