General information for g3458.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein purity of essence.
Parent gene
- The parent gene g3458 is located on chr_3: 25550178..25552827 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3458 | g3458.t2 | TSS | g3458.t2 | 25534359 | 25534359 |
| chr_3 | g3458 | g3458.t2 | isoform | g3458.t2 | 25535353 | 25536632 |
| chr_3 | g3458 | g3458.t2 | exon | g3458.t2.exon1 | 25535353 | 25536632 |
| chr_3 | g3458 | g3458.t2 | cds | g3458.t2.CDS1 | 25535370 | 25536632 |
| chr_3 | g3458 | g3458.t2 | TTS | g3458.t2 | 25536627 | 25536627 |
Sequences
>g3458.t2 Gene=g3458 Length=1280
TCTTTAGAAAAGAAGTTATGGATTTACTTAAATCATTAAATGCTAGTGATGTTTTTCTCA
ATTGGTGCATTAACTGTATACCAATTATTTCATCAACATACAGTTTAAAATTTAATGGCG
ATATGATACTTCAACAAAAATCATTACATCTCCCACAAACACAAAACGATGCACAAAATG
TGAGACAATGTCTTAAACAAATAGATATTGACACCAACAATATTCTCAATATATTGCAAT
TACCAATTATGGAACCATTAAACAAAACTAGAATTCTTCAGCTTTCACAGCTTTCAATTT
TGTCGCTTTATTGCTGTGTCGTCACTACTATTGCTCATAGCATTACTATGATCTCGACCA
ACAGTGCTGGTACTCAAACGACTGCTCTTAAGAGTGCCTCAACTTCAACTCAACAACAAA
CACAAAGTTCGTCTTCAAATACTAAAGAGTCTCAATCAATTGCAGTGGAAATTGATCCTT
TTGAAGAAGTTTCACGAAAAGTTGTCAATCAATCATTGGAAATATTTAAAAATGTCAATG
AAATTTTTAAAAAGCATGCACAGACAAATATTTATCAAAATCATGTGTGTTTGGGTGCAT
GGATTTTATTCACTGGTATTCAAGGAGCAATGAGTGTTAGCGGTTCAAAGTCACAAACAC
AATTGCAAAGCGGTTCATCTGATGAATTTGTGAAGAGTAAAAGTCCATCACGTCATGTTG
ATTCAAATATTCCACCTGCACCTCAACCGAGAGTCAATTTATTTAAAGTGCAACAAGGCT
TTTCAGTTTTGAATGTATTGATTGCAAAGTGTGGTATTCAATTAATGGAAGAACTTTTGA
ATGAAATGAAAGTTGACAGTGGCAATGGTCTAGATTTAAAATTAAATGAAGATATTCTAA
TTGCACAGCAACAGCATTTGTCACCTGAATATATCAATTTCAACATTATGAAAACATATA
CATCAATTGATCGTATAATTTGCGCTTTTAATGGAACGAATATTCAACAACTTTTGACTT
TTCTTGCCACTATCTCTTATAGAAAAGCTTGTTCACTTAAGCTGACTGAATTTGGTGGTG
AGCAACTTAGTTACAGTGATTCAACAACATATTTCAATGATACATTATCTTGTTCCGAAG
ATGATTCTGAGACAGAAGAAGATGGGGAGCAAGATGAAACAGAAGAAGATAGTAGTGAAG
GATATTTGGGGTCATGGTTAAAGGAAGCTCTTTCACCAGAGGCAAAAGATGCCACTAAAG
ATGATAATGATAAACAAAAA
>g3458.t2 Gene=g3458 Length=421
MDLLKSLNASDVFLNWCINCIPIISSTYSLKFNGDMILQQKSLHLPQTQNDAQNVRQCLK
QIDIDTNNILNILQLPIMEPLNKTRILQLSQLSILSLYCCVVTTIAHSITMISTNSAGTQ
TTALKSASTSTQQQTQSSSSNTKESQSIAVEIDPFEEVSRKVVNQSLEIFKNVNEIFKKH
AQTNIYQNHVCLGAWILFTGIQGAMSVSGSKSQTQLQSGSSDEFVKSKSPSRHVDSNIPP
APQPRVNLFKVQQGFSVLNVLIAKCGIQLMEELLNEMKVDSGNGLDLKLNEDILIAQQQH
LSPEYINFNIMKTYTSIDRIICAFNGTNIQQLLTFLATISYRKACSLKLTEFGGEQLSYS
DSTTYFNDTLSCSEDDSETEEDGEQDETEEDSSEGYLGSWLKEALSPEAKDATKDDNDKQ
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g3458.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - |
| 3 | g3458.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 421 | - |
| 4 | g3458.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 393 | - |
| 2 | g3458.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 421 | - |
| 6 | g3458.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 8 | g3458.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| 5 | g3458.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 31 | 91 | - |
| 9 | g3458.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 112 | - |
| 7 | g3458.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 113 | 421 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed