General information for g346.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Apyrase.
Parent gene
- The parent gene g346 is located on chr_3: 2809586..2810195 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g346 | g346.t1 | TTS | g346.t1 | 2809119 | 2809119 |
| chr_3 | g346 | g346.t1 | isoform | g346.t1 | 2809586 | 2810195 |
| chr_3 | g346 | g346.t1 | exon | g346.t1.exon1 | 2809586 | 2809726 |
| chr_3 | g346 | g346.t1 | cds | g346.t1.CDS1 | 2809586 | 2809726 |
| chr_3 | g346 | g346.t1 | exon | g346.t1.exon2 | 2809782 | 2809846 |
| chr_3 | g346 | g346.t1 | cds | g346.t1.CDS2 | 2809782 | 2809846 |
| chr_3 | g346 | g346.t1 | exon | g346.t1.exon3 | 2809994 | 2810195 |
| chr_3 | g346 | g346.t1 | cds | g346.t1.CDS3 | 2809994 | 2810195 |
| chr_3 | g346 | g346.t1 | TSS | g346.t1 | NA | NA |
Sequences
>g346.t1 Gene=g346 Length=408
ATGGTGGAGATAATTGATATAATTGTCGGTGGTCATTCTCACTCATTTCTTTATTCTGGA
ACTCCTTCAATTGGACCAGACACACCTGTAAGTGACTATCCAACAATTGAAGAGCAAGAA
AACGTTAGAAAAGTTCTAATAGTTCAAGCATCTGCTTATAATAAATATCTTGGAAATATC
ACACTCTATTTTGATGAAGATGATTCTTTCTGTTATCAAAGAGAATGTGGTATGGGTAAT
TTAATTACAGATTCTATGGCTTATGCTTTTCTTGATCAAGCAAAAGAAGGAGAATGGACA
GGAGCATCGATTGCATTTCAAGTTCCCGGTGGTGTACGAGCTGGTTTAGAATCTGGAAAT
GTAATTTATGCTGATTTAATCACAACTACTCATTTGAAAACAAATTAA
>g346.t1 Gene=g346 Length=135
MVEIIDIIVGGHSHSFLYSGTPSIGPDTPVSDYPTIEEQENVRKVLIVQASAYNKYLGNI
TLYFDEDDSFCYQRECGMGNLITDSMAYAFLDQAKEGEWTGASIAFQVPGGVRAGLESGN
VIYADLITTTHLKTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g346.t1 | Gene3D | G3DSA:3.60.21.10 | - | 1 | 102 | 0 |
| 3 | g346.t1 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 4 | 67 | 0 |
| 5 | g346.t1 | PANTHER | PTHR11575:SF32 | APYRASE-LIKE PROTEIN | 4 | 67 | 0 |
| 2 | g346.t1 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 69 | 129 | 0 |
| 4 | g346.t1 | PANTHER | PTHR11575:SF32 | APYRASE-LIKE PROTEIN | 69 | 129 | 0 |
| 1 | g346.t1 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 71 | 129 | 0 |
| 7 | g346.t1 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 5 | 70 | 0 |
| 6 | g346.t1 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 54 | 129 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
