Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative U4/U6.U5 tri-snRNP-associated protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3473 g3473.t7 TSS g3473.t7 25773588 25773588
chr_3 g3473 g3473.t7 isoform g3473.t7 25774008 25774707
chr_3 g3473 g3473.t7 exon g3473.t7.exon1 25774008 25774172
chr_3 g3473 g3473.t7 exon g3473.t7.exon2 25774230 25774707
chr_3 g3473 g3473.t7 cds g3473.t7.CDS1 25774509 25774706
chr_3 g3473 g3473.t7 TTS g3473.t7 25775455 25775455

Sequences

>g3473.t7 Gene=g3473 Length=643
GTTTATGCATGTTTGGTTTGCGGAAAATATTTCCAAGGAAGAGGGAAGAGTACTCATGCA
TATACACATTCAGTGGCAGAATCACATCATGTTTTTCTCAATCTCTCAAATTTGAGATTT
TACTGTTTACCAGATAATTATGAAATCATCGATTCATCTTTAGATGATATAAAGTATGTT
CTTAATCCAACTTTTACAAAAAATGATATAAAAGTACTTGATGATTCAGAGAAGACTTCA
AGAACTCTTGATGGAACTTTATATTTTCCTGGGATAGTTGGTCTCAATAATATTAAAGCA
AATGACTATTGTAATGTTGTTCTTCAAGCACTCTCACATGTGACACCAATTAGAGACTAT
TTTCTATGTGAACAAAATTATTCAAAAATTAAGCATTCATCGGGCGATTCTGCTTTTGCA
ATTGTGCAACGCTTCGGTGAATTAATGAGAAAATTGTGGAATCCAAGAAATTTTAAAGCT
CATGTTTCTCCGCATGAAATGCTTCAAGCTGTTGTTCTTTGGAGCAATAAAAGATTTCAA
ATTATTGAACAGAGCGATCCAATTGATTTTCTTACATGGTTTTTGCATGAATTACATCGT
CAATTGAGAGGAAATAAAAATCTTAACTCAAGCATTATCAATA

>g3473.t7 Gene=g3473 Length=66
MRKLWNPRNFKAHVSPHEMLQAVVLWSNKRFQIIEQSDPIDFLTWFLHELHRQLRGNKNL
NSSIIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g3473.t7 Gene3D G3DSA:3.90.70.10 Cysteine proteinases 1 66 0
1 g3473.t7 PANTHER PTHR21646 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 65 0
2 g3473.t7 PANTHER PTHR21646:SF16 U4/U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 2 2 65 0
3 g3473.t7 SUPERFAMILY SSF54001 Cysteine proteinases 2 60 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006397 mRNA processing BP
GO:0000245 spliceosomal complex assembly BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed