General information for g3482.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Iduronate 2-sulfatase.
Parent gene
- The parent gene g3482 is located on chr_3: 25849267..25850195 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3482 | g3482.t2 | TSS | g3482.t2 | 25848459 | 25848459 |
| chr_3 | g3482 | g3482.t2 | isoform | g3482.t2 | 25849267 | 25850195 |
| chr_3 | g3482 | g3482.t2 | exon | g3482.t2.exon1 | 25849267 | 25850195 |
| chr_3 | g3482 | g3482.t2 | cds | g3482.t2.CDS1 | 25849510 | 25850037 |
| chr_3 | g3482 | g3482.t2 | TTS | g3482.t2 | 25850349 | 25850349 |
Sequences
>g3482.t2 Gene=g3482 Length=929
TTTCCTTATGAGTATCTTAAGTATCATGACATCAATAACTTTCGCAAAGACTTTCTACGA
CCTTTTGATTTGCCTCAAGCTGCATGGAACCCATTCAATGATTTACGAGACCGTGATGAT
GTTAAAAGTCTCAATGTTAGCTATCCGTTTGGTCCTATACCAAGTGAATTTGCAGCTAAA
ATTCGACAGCATTACTATGCAAGTGTAACATATATTGATTCGTTGCTTGGTGAAATTTTG
AAAATGATTGATTTTACTAATACGATTGTCGTATTGACCAGTGACCACGGATGGAGTTGT
GGTGAGCATGGAGAATGGGCAAAATATAGCAATTATGAAGTGTCATTACGAGTCCCGTTA
ATAATTTTTGATCCAGAACGACCGCAATCGAAAATGCGACGCATCAATTCAATTGCTGAA
CTCATCGACGTTTTTCCTACACTCGTTGATATAGCTGGGTTACCAAAAGTGAGTAAATGC
AATAACACACTAGAGGATAATTTGACATGCACGGAAGGAAAGAGCCTGCACCACAAAATG
CTGAATGATGAAGAGAACAATGATGATAATGAAGTCGCATTCAGTCAATATCCGCGGCCT
GGAACTTATCCAACAAAAATACCCGATAGCGATCAACCAAAATTGAGAGAAATCAAAATT
ATGGGCTATACGATACGTACGAAAAGATTTCGATACACTGCCTGGATTAAATTTAACAAC
AAAAAATTTAAACGAAGTGAGTTTTCATTAAATATTTTTATTAAATCTTGAATTTAAAGT
ATTTTTTTATAGATTGGAATAAAATTTATGGTGAAGAACTTTATGACCATGATATTGATG
ATAGTGAAAATATAAATCTTGTTCATCGTGCTGAATTTAGACAACTTAAGAATCAACTTA
AGGAAAAATTAATGAAAAAATTTCCATGA
>g3482.t2 Gene=g3482 Length=175
MIDFTNTIVVLTSDHGWSCGEHGEWAKYSNYEVSLRVPLIIFDPERPQSKMRRINSIAEL
IDVFPTLVDIAGLPKVSKCNNTLEDNLTCTEGKSLHHKMLNDEENNDDNEVAFSQYPRPG
TYPTKIPDSDQPKLREIKIMGYTIRTKRFRYTAWIKFNNKKFKRSEFSLNIFIKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3482.t2 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 4 | 165 | 0 |
| 2 | g3482.t2 | PANTHER | PTHR45953 | IDURONATE 2-SULFATASE | 6 | 164 | 0 |
| 1 | g3482.t2 | Pfam | PF00884 | Sulfatase | 6 | 72 | 0 |
| 3 | g3482.t2 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 5 | 156 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008484 | sulfuric ester hydrolase activity | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed