General information for g352.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g352 is located on chr_3: 2822934..2823957 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g352 | g352.t7 | isoform | g352.t7 | 2822486 | 2823301 |
| chr_3 | g352 | g352.t7 | exon | g352.t7.exon1 | 2822486 | 2823301 |
| chr_3 | g352 | g352.t7 | cds | g352.t7.CDS1 | 2822934 | 2823215 |
| chr_3 | g352 | g352.t7 | TSS | g352.t7 | 2824055 | 2824055 |
| chr_3 | g352 | g352.t7 | TTS | g352.t7 | NA | NA |
Sequences
>g352.t7 Gene=g352 Length=816
GATGGGGCTTAGAAGACGATGAATTTTATGTAAGACTCAAAGATGCATCTATAAAAGTTT
ATCGACCACAAAACATCAAAACAGACATGAGCAATACATTTGTACATAATCATGATAGAA
TACATAGACGTCGTGATACTGCCAAATGTTACAATCAAAAAGAGGAAACTCGAAAACGTG
ATAAAAAGACTGGACTTGATACATTGAAATATAACATAAATTCACGCAAAGAACTCGCTA
TTGATGGTATTAAATTGACAATTCTTAATGTCAAATTCGAGTGTGATAAGAGCTTGACAC
CATGGTGTGAATGTAGTGGTGATATGCCAACAAAAGATACAAAATCAAAAGCTAAAAAAG
GACTTTGATGACGACATGCATTGAATAATGAAAATCATCATTGAATTACGTTTCTAGGAT
AATCACAATAAGTTTTTTACCTTTTTATTGTTTCTCAATTAATTTCAAACATTTTAATTA
ATTTATTTGCTACATTGTTTTAAAATCAGCTCTATCTGTATATCCTCACAATTGTCACTA
AATAATCAATAAATGTTGCATGTTTTATATTTCAATTTTCTTTAAATAACAGCAACACAC
AATCACTCATACTACAGACACACATTATAATCTATATTATTCAATAAAATAAAGCATTTT
TATCTTTGACTTTAGAAATTAATAATAAAGAAAAGAGCCAATTTTTTGATAAAAACAAAT
TTTCCTGCTATGTCTTTGTCAATGTGTCAGAATTAACAAAATAAGGAATAAACAACTTAA
ATTCTTCTTTCATGCTTCATCCTTTTAAATTTACGA
>g352.t7 Gene=g352 Length=93
MSNTFVHNHDRIHRRRDTAKCYNQKEETRKRDKKTGLDTLKYNINSRKELAIDGIKLTIL
NVKFECDKSLTPWCECSGDMPTKDTKSKAKKGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g352.t7 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 77 | 2.8E-16 |
| 4 | g352.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - |
| 3 | g352.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 33 | - |
| 1 | g352.t7 | PANTHER | PTHR19300:SF30 | BETA-1,4-GALACTOSYLTRANSFERASE 7 | 3 | 77 | 1.8E-21 |
| 2 | g352.t7 | PANTHER | PTHR19300 | BETA-1,4-GALACTOSYLTRANSFERASE | 3 | 77 | 1.8E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
