Gene loci information

Transcript annotation

  • This transcript has been annotated as Lysophospholipid acyltransferase 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g353 g353.t4 TSS g353.t4 2824110 2824110
chr_3 g353 g353.t4 isoform g353.t4 2824163 2826985
chr_3 g353 g353.t4 exon g353.t4.exon1 2824163 2824383
chr_3 g353 g353.t4 cds g353.t4.CDS1 2824163 2824383
chr_3 g353 g353.t4 exon g353.t4.exon2 2824433 2825743
chr_3 g353 g353.t4 cds g353.t4.CDS2 2824433 2825642
chr_3 g353 g353.t4 exon g353.t4.exon3 2826972 2826985
chr_3 g353 g353.t4 TTS g353.t4 2827034 2827034

Sequences

>g353.t4 Gene=g353 Length=1546
ATGTCCACTGAATTGAGACACGACGATCTGATTTATGGCATTGTGTTACTTCTCGGTATC
GGTTTCGGGCATTTTTATAGAAAAATCCGTGATATTTCAAATAAGAAACTGATTGGAACA
ATCTATGGCTTGTCAATAATTCTTTTCACATCAAAACTTCAATCATTCCACATCTTCATC
ACATTTTTTATCAGTTGCATTATCATCAAAGTCAATGAAAGGAAATGTCATTTAATTGTA
TTCTGGTTTATGATGGGATATTTGCTTTTTCTTCGAAATGTCACTTGGTTTGGTTTGTCA
GCTATGGTAGGACATGCAAACATGATTCAAATGATAATGACATTGAAGATTATTGGATTT
GCATTTGAGAAAAATACTGTAGTTACAAAGGTCAGAGATGCTGAGAAGAAGGGGGAAAAA
ATTGAGTTGAATGGTTATGAGAGAGCATTGAAAGAAAGTACAACTTTTGAAATCTTCCAT
TATTGTTTCAATTATATTGGATTGGTAACTGGTCCATATTACACTTACAAAACATTTTAC
GATTTCTTCCACTTGCCATTTAGTAAATATGTCGACTATTGGAAGTCAACTTTAGAGAGA
CTCAAATATGTTCCCATTTATGTCGTTCTTTTTCTTACTGCATCATACATTTGGCCACTC
GAATATGCTTCAACTAATGAATTTTATGAATCTCGTTCTTTTCTTTATCGTCTGTTTTTT
GTATGGCCAACTTTCTTCATCTTTCGAATGAGAATTTATAGTGGAATAATTTTGGCTGAA
TGTGTCTGCATTAGTGCAGGTTTTGGTGCATATCCCAAACAATTAAATACCAAATGTGGT
CATGGACCATCAGAAGAAATTACCAAAGAAATTATAGAAAGAGCTGATAAATTGGAATAC
GAATTTAAAACAATTGAAAATGTTGATGTAAAAAGTGTTGAAACATGCTACACGTTTAGA
GAAGCAATGAAGCACTGGAATAAGTGCATTCAGTATTGGCTTGCAATGTACATCTACAAG
AGATTTCCGAACAAGAAATATCGAGTTATTGCGACAATGCTTGTCTCATCATATTGGCAT
GGAGTTCATGCTGGATATTATTTTTGCATTCTCGGACCTATTTTTTATCTTCCAATTGAA
GATCTTTATTTAAAATTATTTAAATCTGAGTATCCACAAATTCAACAAATTTACAATGTG
TGCTTATGGATTTTGAAATTCTTTGCATTCAGTTATTTGGGAACTGCTTTCTTACTTAAA
GATGTCAAGAAAATTTGGTTCTATTATTCATCTGTTTACCATTTTGGTTATATTTTCTGG
GCTATTCTCTTTATCATCTGTTTAGTATTGTGGACACAAAAGAAACGTGCCATAAAGAGA
GCCGAAAAGAAAATAGAGGCGGCTATCGCTGAAGACAAAAAAGAAAACTAATTCCGTCTT
GCTTGATATTATTTTTATTACATTTGCATGATATTTTTAAAGACTTGGTTGTAATGAATT
CTCATTTTTCCGTACTTTTATTTATTTATAAAATCATTTATAGTTT

>g353.t4 Gene=g353 Length=476
MSTELRHDDLIYGIVLLLGIGFGHFYRKIRDISNKKLIGTIYGLSIILFTSKLQSFHIFI
TFFISCIIIKVNERKCHLIVFWFMMGYLLFLRNVTWFGLSAMVGHANMIQMIMTLKIIGF
AFEKNTVVTKVRDAEKKGEKIELNGYERALKESTTFEIFHYCFNYIGLVTGPYYTYKTFY
DFFHLPFSKYVDYWKSTLERLKYVPIYVVLFLTASYIWPLEYASTNEFYESRSFLYRLFF
VWPTFFIFRMRIYSGIILAECVCISAGFGAYPKQLNTKCGHGPSEEITKEIIERADKLEY
EFKTIENVDVKSVETCYTFREAMKHWNKCIQYWLAMYIYKRFPNKKYRVIATMLVSSYWH
GVHAGYYFCILGPIFYLPIEDLYLKLFKSEYPQIQQIYNVCLWILKFFAFSYLGTAFLLK
DVKKIWFYYSSVYHFGYIFWAILFIICLVLWTQKKRAIKRAEKKIEAAIAEDKKEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g353.t4 Coils Coil Coil 458 476 -
2 g353.t4 PANTHER PTHR13906 PORCUPINE 8 463 1.5E-145
3 g353.t4 PANTHER PTHR13906:SF16 LYSOPHOSPHOLIPID ACYLTRANSFERASE 7 8 463 1.5E-145
1 g353.t4 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 69 419 2.5E-31
17 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 8 -
26 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 9 26 -
21 g353.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 27 45 -
30 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 46 69 -
15 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 70 75 -
34 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 76 96 -
22 g353.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 97 101 -
25 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 102 122 -
19 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 123 157 -
28 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 158 176 -
20 g353.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 177 202 -
29 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 203 222 -
14 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 223 233 -
32 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 234 252 -
24 g353.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 253 357 -
27 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 358 379 -
16 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 380 399 -
31 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 400 419 -
23 g353.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 420 424 -
33 g353.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 425 451 -
18 g353.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 452 476 -
11 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 29 -
6 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 42 64 -
10 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 101 -
9 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 161 183 -
4 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 203 220 -
12 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 233 252 -
8 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 362 384 -
7 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 397 419 -
5 g353.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 429 451 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values