General information for g3532.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3532 is located on chr_3: 26225591..26228690 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3532 | g3532.t11 | TTS | g3532.t11 | 26221773 | 26221773 |
| chr_3 | g3532 | g3532.t11 | isoform | g3532.t11 | 26222052 | 26226606 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon1 | 26222052 | 26222494 |
| chr_3 | g3532 | g3532.t11 | cds | g3532.t11.CDS1 | 26222402 | 26222494 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon2 | 26222577 | 26222723 |
| chr_3 | g3532 | g3532.t11 | cds | g3532.t11.CDS2 | 26222577 | 26222723 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon3 | 26222785 | 26222988 |
| chr_3 | g3532 | g3532.t11 | cds | g3532.t11.CDS3 | 26222785 | 26222988 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon4 | 26225543 | 26225806 |
| chr_3 | g3532 | g3532.t11 | cds | g3532.t11.CDS4 | 26225543 | 26225806 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon5 | 26226033 | 26226264 |
| chr_3 | g3532 | g3532.t11 | cds | g3532.t11.CDS5 | 26226033 | 26226038 |
| chr_3 | g3532 | g3532.t11 | exon | g3532.t11.exon6 | 26226546 | 26226606 |
| chr_3 | g3532 | g3532.t11 | TSS | g3532.t11 | 26226624 | 26226624 |
Sequences
>g3532.t11 Gene=g3532 Length=1351
GAGTCGAGCGGTTCTTTAAAACCATAACTCGCAAAAGCCGAAGAAAATAAATAGTGACAG
ACATCATACTCTACTCTATAAAAATAATTTACTTTTTCGCTGTGGATAAGCAGAGAAAAG
AAAGAAATTTTTTTTTGGAAAATTTCAAAGAGAAGAAAATAAATTGAACTCGTAAATAAT
AATAAGAATAAGAGTGAAATTGGCTCATCGCGTGTGTGTATTTTATTTTTGAACCCTGTC
TGTGGAAAAAAGCTATTCGCTCAGTGTAAAATTAACTGACCGGCGAAATGCAGGTCCCAA
GACTAGAAAGACGTCGTGCTTCATTGCGCCATGAGTCATTGAGACGTGGCAGCATCGTTC
AACCCATTTCTAAAGAGGTGCCATGGGATATTTTTGATAGATTATTCCTGCCAGTACTTT
ACTGTCATGCTATCGCCATCATTTTTAGTGCTGTCTTGCAAGTTTTTGAAATTCAATTTG
CCTTCTCAACATTTGGAATTTTTATACTCCTTTCAATAGCTACCGTCACGCTTACACTCT
TCTATCACAATCTTAAGGTTTCGGCATCTGGAAAAGCAGTTTTAGTAACCGGCTGTGAAA
ATCCACTCGCTTGGTATTTATGCAAGAAACTCGATGAAATTGGTTTTTCCGTTTTTGCTG
GATTCAAGAATGTTGCCGATAATTCTGATGCTGAACTTCTTACTGAAGAATGCTCTGCTC
GTGTACGACTTGTTCAAATTGATGCTTCATCTGATACTCAGATGCAAGAAGCTGCAAAGT
TTATTGAAAACAATTTGCCTGATGGTGCAACTGGTTTATGGGCATTATTGCATTGCGATC
ATTGGAATGCAATTGGTGAACTCGAATGGATTCCTCCAGCTGTCTTGAAAAAATCCTTGG
AAACTAATCAATGTCAAAGATCTACAACCCAGTGCGTGGCATTCAAACAGCTATTAATAA
TGCTATTGAGAGCTTGGCTCTATGTCTCCGTTCAGAAATGAGACGTCATGGTGTTCATGT
TATTGTAGTTGCTGCAGGAGAATTTGCTTCAGGCACCGCGTGGTTAGATAATGAAGATCT
TTGTGAACAGGCAAAACTTATGTGGAAAAATATGAATGATTCATTAAGATTTGAAATTGT
CGATGAAAAATATTTCGAGTTCACTATTCGTCAATTGGAACGTTATACAAAAGTTACTGT
TGATTTAACACCCGCCATTCATACACTCATCGATGCCGTTCAAAAAGCTTTTCCTTTGCC
ACGATACACTCCCATTACTTTCGAGGAAAAACTCAAGACACTTATTGCCGATTACATGCC
TTATGCTGTTTATGATGTTATCTACAATTAA
>g3532.t11 Gene=g3532 Length=237
MQVPRLERRRASLRHESLRRGSIVQPISKEVPWDIFDRLFLPVLYCHAIAIIFSAVLQVF
EIQFAFSTFGIFILLSIATVTLTLFYHNLKVSASGKAVLVTGCENPLAWYLCKKLDEIGF
SVFAGFKNVADNSDAELLTEECSARVRLVQIDASSDTQMQEAAKFIENNLPDGATGLWAL
LHCDHWNAIGELEWIPPAVLKKSLETNQCQRSTTQCVAFKQLLIMLLRAWLYVSVQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3532.t11 | Gene3D | G3DSA:3.40.50.720 | - | 92 | 211 | 9.3E-10 |
| 1 | g3532.t11 | PANTHER | PTHR43313:SF36 | GH26015P | 34 | 208 | 8.9E-46 |
| 2 | g3532.t11 | PANTHER | PTHR43313 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C | 34 | 208 | 8.9E-46 |
| 8 | g3532.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 38 | - |
| 11 | g3532.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 60 | - |
| 9 | g3532.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 61 | 65 | - |
| 10 | g3532.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 86 | - |
| 7 | g3532.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 87 | 237 | - |
| 5 | g3532.t11 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 85 | 207 | 3.35E-10 |
| 4 | g3532.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 38 | 60 | - |
| 3 | g3532.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 86 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed