Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3532 g3532.t19 TTS g3532.t19 26221773 26221773
chr_3 g3532 g3532.t19 isoform g3532.t19 26222052 26226624
chr_3 g3532 g3532.t19 exon g3532.t19.exon1 26222052 26222723
chr_3 g3532 g3532.t19 cds g3532.t19.CDS1 26222052 26222492
chr_3 g3532 g3532.t19 exon g3532.t19.exon2 26222826 26222988
chr_3 g3532 g3532.t19 exon g3532.t19.exon3 26225543 26225806
chr_3 g3532 g3532.t19 exon g3532.t19.exon4 26226033 26226264
chr_3 g3532 g3532.t19 exon g3532.t19.exon5 26226542 26226624
chr_3 g3532 g3532.t19 TSS g3532.t19 26226624 26226624

Sequences

>g3532.t19 Gene=g3532 Length=1414
AGTAGGTTTTTAAATTTTGAGTCGAGCGGTTCTTTAAAACCATAACTCGCAAAAGCCGAA
GAAAATAAATAGTGACAGAGTGTCATCATACTCTACTCTATAAAAATAATTTACTTTTTC
GCTGTGGATAAGCAGAGAAAAGAAAGAAATTTTTTTTTGGAAAATTTCAAAGAGAAGAAA
ATAAATTGAACTCGTAAATAATAATAAGAATAAGAGTGAAATTGGCTCATCGCGTGTGTG
TATTTTATTTTTGAACCCTGTCTGTGGAAAAAAGCTATTCGCTCAGTGTAAAATTAACTG
ACCGGCGAAATGCAGGTCCCAAGACTAGAAAGACGTCGTGCTTCATTGCGCCATGAGTCA
TTGAGACGTGGCAGCATCGTTCAACCCATTTCTAAAGAGGTGCCATGGGATATTTTTGAT
AGATTATTCCTGCCAGTACTTTACTGTCATGCTATCGCCATCATTTTTAGTGCTGTCTTG
CAAGTTTTTGAAATTCAATTTGCCTTCTCAACATTTGGAATTTTTATACTCCTTTCAATA
GCTACCGTCACGCTTACACTCTTCTATCACAATCTTAAGGTTTCGGCATCTGGAAAAGCA
GTTTTAGTAACCGGCTGTGAAAATCCACTCGCTTGGTATTTATGCAAGAAACTCGATGAA
ATTGGTTTTTCCGTTTTTGCTGGATTCAAGAATGTTGCCGATAATTCTGATGCTGAACTT
CTTACTGAAGAATGCTCTGCTCATGCAAGAAGCTGCAAAGTTTATTGAAAACAATTTGCC
TGATGGTGCAACTGGTTTATGGGCATTATTGCATTGCGATCATTGGAATGCAATTGGTGA
ACTCGAATGGATTCCTCCAGCTGTCTTGAAAAAATCCTTGGAAACTAATGTTGCTGGAAC
CGTACGCATTACTCAAATCTTTTTGCCAATCATTCGTCGTGGCAAGGGACGTGTTGTTTA
TCTTTCATCAGCAATGTCAAAGATCTACAACCCAGTGCGTGGCATTCAAACAGCTATTAA
TAATGCTATTGAGAGCTTGGCTCTATGTCTCCGTTCAGAAATGAGACGTCATGGTGTTCA
TGTTATTGTAGTTGCTGCAGGAGAATTTGCTTCAGGCACCGCGTGGTTAGATAATGAAGA
TCTTTGTGAACAGGCAAAACTTATGTGGAAAAATATGAATGATTCATTAAGATTTGAAAT
TGTCGATGAAAAATATTTCGAGTTCACTATTCGTCAATTGGAACGTTATACAAAAGTTAC
TGTTGATTTAACACCCGCCATTCATACACTCATCGATGCCGTTCAAAAAGCTTTTCCTTT
GCCACGATACACTCCCATTACTTTCGAGGAAAAACTCAAGACACTTATTGCCGATTACAT
GCCTTATGCTGTTTATGATGTTATCTACAATTAA

>g3532.t19 Gene=g3532 Length=146
MSKIYNPVRGIQTAINNAIESLALCLRSEMRRHGVHVIVVAAGEFASGTAWLDNEDLCEQ
AKLMWKNMNDSLRFEIVDEKYFEFTIRQLERYTKVTVDLTPAIHTLIDAVQKAFPLPRYT
PITFEEKLKTLIADYMPYAVYDVIYN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g3532.t19 Gene3D G3DSA:3.40.50.720 - 1 139 2.4e-05
1 g3532.t19 PANTHER PTHR43313:SF36 GH26015P 3 146 0.0e+00
2 g3532.t19 PANTHER PTHR43313 SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C 3 146 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed