General information for g3532.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3532 is located on chr_3: 26225591..26228690 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3532 | g3532.t20 | TTS | g3532.t20 | 26221773 | 26221773 |
| chr_3 | g3532 | g3532.t20 | isoform | g3532.t20 | 26222052 | 26226624 |
| chr_3 | g3532 | g3532.t20 | exon | g3532.t20.exon1 | 26222052 | 26222713 |
| chr_3 | g3532 | g3532.t20 | cds | g3532.t20.CDS1 | 26222597 | 26222713 |
| chr_3 | g3532 | g3532.t20 | exon | g3532.t20.exon2 | 26222785 | 26222988 |
| chr_3 | g3532 | g3532.t20 | cds | g3532.t20.CDS2 | 26222785 | 26222988 |
| chr_3 | g3532 | g3532.t20 | exon | g3532.t20.exon3 | 26225543 | 26225806 |
| chr_3 | g3532 | g3532.t20 | cds | g3532.t20.CDS3 | 26225543 | 26225806 |
| chr_3 | g3532 | g3532.t20 | exon | g3532.t20.exon4 | 26226033 | 26226264 |
| chr_3 | g3532 | g3532.t20 | cds | g3532.t20.CDS4 | 26226033 | 26226038 |
| chr_3 | g3532 | g3532.t20 | exon | g3532.t20.exon5 | 26226546 | 26226624 |
| chr_3 | g3532 | g3532.t20 | TSS | g3532.t20 | 26226624 | 26226624 |
Sequences
>g3532.t20 Gene=g3532 Length=1441
AGTAGGTTTTTAAATTTTGAGTCGAGCGGTTCTTTAAAACCATAACTCGCAAAAGCCGAA
GAAAATAAATAGTGACAGACATCATACTCTACTCTATAAAAATAATTTACTTTTTCGCTG
TGGATAAGCAGAGAAAAGAAAGAAATTTTTTTTTGGAAAATTTCAAAGAGAAGAAAATAA
ATTGAACTCGTAAATAATAATAAGAATAAGAGTGAAATTGGCTCATCGCGTGTGTGTATT
TTATTTTTGAACCCTGTCTGTGGAAAAAAGCTATTCGCTCAGTGTAAAATTAACTGACCG
GCGAAATGCAGGTCCCAAGACTAGAAAGACGTCGTGCTTCATTGCGCCATGAGTCATTGA
GACGTGGCAGCATCGTTCAACCCATTTCTAAAGAGGTGCCATGGGATATTTTTGATAGAT
TATTCCTGCCAGTACTTTACTGTCATGCTATCGCCATCATTTTTAGTGCTGTCTTGCAAG
TTTTTGAAATTCAATTTGCCTTCTCAACATTTGGAATTTTTATACTCCTTTCAATAGCTA
CCGTCACGCTTACACTCTTCTATCACAATCTTAAGGTTTCGGCATCTGGAAAAGCAGTTT
TAGTAACCGGCTGTGAAAATCCACTCGCTTGGTATTTATGCAAGAAACTCGATGAAATTG
GTTTTTCCGTTTTTGCTGGATTCAAGAATGTTGCCGATAATTCTGATGCTGAACTTCTTA
CTGAAGAATGCTCTGCTCGTGTACGACTTGTTCAAATTGATGCTTCATCTGATACTCAGC
TGCAAAGTTTATTGAAAACAATTTGCCTGATGGTGCAACTGGTTTATGGGCATTATTGCA
TTGCGATCATTGGAATGCAATTGGTGAACTCGAATGGATTCCTCCAGCTGTCTTGAAAAA
ATCCTTGGAAACTAATGTTGCTGGAACCGTACGCATTACTCAAATCTTTTTGCCAATCAT
TCGTCGTGGCAAGGGACGTGTTGTTTATCTTTCATCAGCAATGTCAAAGATCTACAACCC
AGTGCGTGGCATTCAAACAGCTATTAATAATGCTATTGAGAGCTTGGCTCTATGTCTCCG
TTCAGAAATGAGACGTCATGGTGTTCATGTTATTGTAGTTGCTGCAGGAGAATTTGCTTC
AGGCACCGCGTGGTTAGATAATGAAGATCTTTGTGAACAGGCAAAACTTATGTGGAAAAA
TATGAATGATTCATTAAGATTTGAAATTGTCGATGAAAAATATTTCGAGTTCACTATTCG
TCAATTGGAACGTTATACAAAAGTTACTGTTGATTTAACACCCGCCATTCATACACTCAT
CGATGCCGTTCAAAAAGCTTTTCCTTTGCCACGATACACTCCCATTACTTTCGAGGAAAA
ACTCAAGACACTTATTGCCGATTACATGCCTTATGCTGTTTATGATGTTATCTACAATTA
A
>g3532.t20 Gene=g3532 Length=196
MQVPRLERRRASLRHESLRRGSIVQPISKEVPWDIFDRLFLPVLYCHAIAIIFSAVLQVF
EIQFAFSTFGIFILLSIATVTLTLFYHNLKVSASGKAVLVTGCENPLAWYLCKKLDEIGF
SVFAGFKNVADNSDAELLTEECSARVRLVQIDASSDTQLQSLLKTICLMVQLVYGHYCIA
IIGMQLVNSNGFLQLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3532.t20 | Gene3D | G3DSA:3.40.50.720 | - | 85 | 194 | 1.7E-6 |
| 1 | g3532.t20 | PANTHER | PTHR43313:SF36 | GH26015P | 34 | 165 | 2.4E-26 |
| 2 | g3532.t20 | PANTHER | PTHR43313 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C | 34 | 165 | 2.4E-26 |
| 9 | g3532.t20 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 38 | - |
| 14 | g3532.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 60 | - |
| 11 | g3532.t20 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 61 | 65 | - |
| 13 | g3532.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 86 | - |
| 8 | g3532.t20 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 87 | 165 | - |
| 12 | g3532.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 166 | 187 | - |
| 10 | g3532.t20 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 188 | 196 | - |
| 6 | g3532.t20 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 85 | 166 | 4.25E-7 |
| 4 | g3532.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 38 | 60 | - |
| 3 | g3532.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 86 | - |
| 5 | g3532.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 187 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed