Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3532 g3532.t31 TTS g3532.t31 26221773 26221773
chr_3 g3532 g3532.t31 isoform g3532.t31 26222786 26226038
chr_3 g3532 g3532.t31 exon g3532.t31.exon1 26222786 26222988
chr_3 g3532 g3532.t31 cds g3532.t31.CDS1 26222788 26222988
chr_3 g3532 g3532.t31 exon g3532.t31.exon2 26225543 26225806
chr_3 g3532 g3532.t31 cds g3532.t31.CDS2 26225543 26225806
chr_3 g3532 g3532.t31 exon g3532.t31.exon3 26226033 26226038
chr_3 g3532 g3532.t31 cds g3532.t31.CDS3 26226033 26226038
chr_3 g3532 g3532.t31 TSS g3532.t31 26226624 26226624

Sequences

>g3532.t31 Gene=g3532 Length=473
ATGCAGGTCCCAAGACTAGAAAGACGTCGTGCTTCATTGCGCCATGAGTCATTGAGACGT
GGCAGCATCGTTCAACCCATTTCTAAAGAGGTGCCATGGGATATTTTTGATAGATTATTC
CTGCCAGTACTTTACTGTCATGCTATCGCCATCATTTTTAGTGCTGTCTTGCAAGTTTTT
GAAATTCAATTTGCCTTCTCAACATTTGGAATTTTTATACTCCTTTCAATAGCTACCGTC
ACGCTTACACTCTTCTATCACAATCTTAAGGTTTCGGCATCTGGAAAAGCAGTTTTAGTA
ACCGGCTGTGAAAATCCACTCGCTTGGTATTTATGCAAGAAACTCGATGAAATTGGTTTT
TCCGTTTTTGCTGGATTCAAGAATGTTGCCGATAATTCTGATGCTGAACTTCTTACTGAA
GAATGCTCTGCTCGTGTACGACTTGTTCAAATTGATGCTTCATCTGATACTCA

>g3532.t31 Gene=g3532 Length=157
MQVPRLERRRASLRHESLRRGSIVQPISKEVPWDIFDRLFLPVLYCHAIAIIFSAVLQVF
EIQFAFSTFGIFILLSIATVTLTLFYHNLKVSASGKAVLVTGCENPLAWYLCKKLDEIGF
SVFAGFKNVADNSDAELLTEECSARVRLVQIDASSDT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g3532.t31 PANTHER PTHR43313:SF36 GH26015P 34 156 1.1E-24
2 g3532.t31 PANTHER PTHR43313 SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C 34 156 1.1E-24
7 g3532.t31 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 38 -
10 g3532.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 39 60 -
8 g3532.t31 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 61 65 -
9 g3532.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 66 86 -
6 g3532.t31 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 87 157 -
5 g3532.t31 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 85 155 3.29E-5
4 g3532.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
3 g3532.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 64 86 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed