General information for g3532.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3532 is located on chr_3: 26225591..26228690 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3532 | g3532.t9 | TTS | g3532.t9 | 26221773 | 26221773 |
| chr_3 | g3532 | g3532.t9 | isoform | g3532.t9 | 26222052 | 26226554 |
| chr_3 | g3532 | g3532.t9 | exon | g3532.t9.exon1 | 26222052 | 26222605 |
| chr_3 | g3532 | g3532.t9 | cds | g3532.t9.CDS1 | 26222052 | 26222492 |
| chr_3 | g3532 | g3532.t9 | exon | g3532.t9.exon2 | 26222785 | 26222988 |
| chr_3 | g3532 | g3532.t9 | exon | g3532.t9.exon3 | 26225543 | 26225806 |
| chr_3 | g3532 | g3532.t9 | exon | g3532.t9.exon4 | 26226033 | 26226264 |
| chr_3 | g3532 | g3532.t9 | exon | g3532.t9.exon5 | 26226542 | 26226554 |
| chr_3 | g3532 | g3532.t9 | TSS | g3532.t9 | 26226624 | 26226624 |
Sequences
>g3532.t9 Gene=g3532 Length=1267
AGTGACAGAGTGTCATCATACTCTACTCTATAAAAATAATTTACTTTTTCGCTGTGGATA
AGCAGAGAAAAGAAAGAAATTTTTTTTTGGAAAATTTCAAAGAGAAGAAAATAAATTGAA
CTCGTAAATAATAATAAGAATAAGAGTGAAATTGGCTCATCGCGTGTGTGTATTTTATTT
TTGAACCCTGTCTGTGGAAAAAAGCTATTCGCTCAGTGTAAAATTAACTGACCGGCGAAA
TGCAGGTCCCAAGACTAGAAAGACGTCGTGCTTCATTGCGCCATGAGTCATTGAGACGTG
GCAGCATCGTTCAACCCATTTCTAAAGAGGTGCCATGGGATATTTTTGATAGATTATTCC
TGCCAGTACTTTACTGTCATGCTATCGCCATCATTTTTAGTGCTGTCTTGCAAGTTTTTG
AAATTCAATTTGCCTTCTCAACATTTGGAATTTTTATACTCCTTTCAATAGCTACCGTCA
CGCTTACACTCTTCTATCACAATCTTAAGGTTTCGGCATCTGGAAAAGCAGTTTTAGTAA
CCGGCTGTGAAAATCCACTCGCTTGGTATTTATGCAAGAAACTCGATGAAATTGGTTTTT
CCGTTTTTGCTGGATTCAAGAATGTTGCCGATAATTCTGATGCTGAACTTCTTACTGAAG
AATGCTCTGCTCGTGTACGACTTGTTCAAATTGATGCTTCATCTGATACTCAGCTGTCTT
GAAAAAATCCTTGGAAACTAATGTTGCTGGAACCGTACGCATTACTCAAATCTTTTTGCC
AATCATTCGTCGTGGCAAGGGACGTGTTGTTTATCTTTCATCAGCAATGTCAAAGATCTA
CAACCCAGTGCGTGGCATTCAAACAGCTATTAATAATGCTATTGAGAGCTTGGCTCTATG
TCTCCGTTCAGAAATGAGACGTCATGGTGTTCATGTTATTGTAGTTGCTGCAGGAGAATT
TGCTTCAGGCACCGCGTGGTTAGATAATGAAGATCTTTGTGAACAGGCAAAACTTATGTG
GAAAAATATGAATGATTCATTAAGATTTGAAATTGTCGATGAAAAATATTTCGAGTTCAC
TATTCGTCAATTGGAACGTTATACAAAAGTTACTGTTGATTTAACACCCGCCATTCATAC
ACTCATCGATGCCGTTCAAAAAGCTTTTCCTTTGCCACGATACACTCCCATTACTTTCGA
GGAAAAACTCAAGACACTTATTGCCGATTACATGCCTTATGCTGTTTATGATGTTATCTA
CAATTAA
>g3532.t9 Gene=g3532 Length=146
MSKIYNPVRGIQTAINNAIESLALCLRSEMRRHGVHVIVVAAGEFASGTAWLDNEDLCEQ
AKLMWKNMNDSLRFEIVDEKYFEFTIRQLERYTKVTVDLTPAIHTLIDAVQKAFPLPRYT
PITFEEKLKTLIADYMPYAVYDVIYN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g3532.t9 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 139 | 2.4e-05 |
| 1 | g3532.t9 | PANTHER | PTHR43313:SF36 | GH26015P | 3 | 146 | 0.0e+00 |
| 2 | g3532.t9 | PANTHER | PTHR43313 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C | 3 | 146 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed