General information for g3537.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Metallophosphoesterase 1-like protein.
Parent gene
- The parent gene g3537 is located on chr_3: 26276779..26277704 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3537 | g3537.t2 | TSS | g3537.t2 | 26276161 | 26276161 |
| chr_3 | g3537 | g3537.t2 | isoform | g3537.t2 | 26276779 | 26277704 |
| chr_3 | g3537 | g3537.t2 | exon | g3537.t2.exon1 | 26276779 | 26277704 |
| chr_3 | g3537 | g3537.t2 | cds | g3537.t2.CDS1 | 26276861 | 26277451 |
| chr_3 | g3537 | g3537.t2 | TTS | g3537.t2 | 26277662 | 26277662 |
Sequences
>g3537.t2 Gene=g3537 Length=926
ATCAGGTGTTAATTTGATAAGAGAAAAAAAAGTGACAGCAGATGGTACGAAAAGAATAGT
AAATTTTGTAACAATCAATTCAATGGCAATGGAAGGAGATGAATGTTATTTGTGTCATCA
AGCTAAAGAAGCATTGAAGTCGATTGGAAAAAAGTTAGAAATTTTAAAACAAAAAAATCG
TCATAGTCCTCCTTTTGTGATGCAACATTTTCCAACGTACAGAAATTCTGATGAAAATTG
CATTGAAATTGATTCAGAAAATACAGATATTACAGTTTATCGTGAAAAATGGGAAGTTTT
GTCGAAATCAGCTAGTGAATTTATTGCTAAAACTATTGAGCCTAGAGGATATTTCAGTGG
ACATACTCATCGGTATTGCATGTATGGAAATGATTATGGAATTTATGAACATACAATCGC
ATCATTTAATTGGCGCAATATTAATATGCCTTCATTTTTATTAGCTGTATTCACACCTGA
TGATTATTCAATTTCAAAATGTGATATGCCAAAAGAGACGACTGTCATTATTTGTTATAT
TGTTGGTACAATTATGCCAATTATTTTTGCTATTATTAATTGTAAGTATCCAATGAGAAA
TTTAGTTCGGAATTTTCTAAGATTTTCCCTGATCAGGATTAAATTTAGTCCAGCTGCTGG
ACTTTCCGGCTAATATTTCATATAAAAAATCCAACATTTTTCGGATTTTTTGATATTTGC
CCATTTTCGGACTACGGCTACCGAACCTCCAAGTCAAAAATTTTCTAATATTTTCAAGTC
CGGTGGCCGGTCTCCGAACAAAAAAAAATTTCTCACTGGGTGCTTAGATAAATTAAATTA
TAAATGGTGAAACAATAAAAAGTCAAAAGATTGAAATTTAAATTATAAATTCCTACATTT
TTCGTAACAGCAAATTCAAAATGACA
>g3537.t2 Gene=g3537 Length=196
MAMEGDECYLCHQAKEALKSIGKKLEILKQKNRHSPPFVMQHFPTYRNSDENCIEIDSEN
TDITVYREKWEVLSKSASEFIAKTIEPRGYFSGHTHRYCMYGNDYGIYEHTIASFNWRNI
NMPSFLLAVFTPDDYSISKCDMPKETTVIICYIVGTIMPIIFAIINCKYPMRNLVRNFLR
FSLIRIKFSPAAGLSG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3537.t2 | Coils | Coil | Coil | 11 | 31 | - |
| 1 | g3537.t2 | PANTHER | PTHR13315:SF0 | METALLOPHOSPHOESTERASE 1 | 1 | 164 | 3.8E-34 |
| 2 | g3537.t2 | PANTHER | PTHR13315 | METALLO PHOSPHOESTERASE RELATED | 1 | 164 | 3.8E-34 |
| 7 | g3537.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 146 | - |
| 8 | g3537.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 147 | 167 | - |
| 6 | g3537.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 168 | 196 | - |
| 4 | g3537.t2 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 28 | 146 | 6.51E-12 |
| 3 | g3537.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 145 | 167 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
