General information for g3541.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1-1.
Parent gene
- The parent gene g3541 is located on chr_3: 26290320..26291115 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3541 | g3541.t4 | TTS | g3541.t4 | 26290235 | 26290235 |
| chr_3 | g3541 | g3541.t4 | isoform | g3541.t4 | 26290320 | 26291115 |
| chr_3 | g3541 | g3541.t4 | exon | g3541.t4.exon1 | 26290320 | 26290484 |
| chr_3 | g3541 | g3541.t4 | exon | g3541.t4.exon2 | 26290545 | 26290651 |
| chr_3 | g3541 | g3541.t4 | cds | g3541.t4.CDS1 | 26290646 | 26290651 |
| chr_3 | g3541 | g3541.t4 | exon | g3541.t4.exon3 | 26290768 | 26291115 |
| chr_3 | g3541 | g3541.t4 | cds | g3541.t4.CDS2 | 26290768 | 26291115 |
| chr_3 | g3541 | g3541.t4 | TSS | g3541.t4 | 26291152 | 26291152 |
Sequences
>g3541.t4 Gene=g3541 Length=620
ATGGAAAGTAAATTAATTTTATATTTAACAAGAGGTTCACCTGCATGTCGATCAGTTTTA
CAATTGTGTCGCATACTTGATCTTAATGTTGAACTCAAAAATGTAAATTTTCAAGCTAAA
GAGCAAAAGAGTGAGACTTTTTCAAAATTAAATCCTTTAAAAGAAGTTCCCGTGCTTGTT
GATGGCGATTTTATTTTGTCTGAATCGCGAGCGATTTTAGCCTATCTTGTGAACTCAAAA
AAACCAAATAGCCCTCTTTATCCTTTTGATCCAAAAAGAAGAGCAATAATTGACCAACGA
TTATATTATGATGCAACAGTGCTTTTTCTATCTCATTCATCTATTGTTTTTTAGAAAATC
TTAATTATTTCTTAAGTCAATCTAAATACTTCGCAAGTAATGAGGACATAACGATAGCTG
ATATTTCAATTTTATCAAGTGTAATTACTATTTATGAGTGTGGACATGATTTAGAGGCAT
TTCCTTATTTATCAAAATGGTTTCACAGTTTGGAAAATTTGCCTGGATTTCAGGAAAATC
AGGAACACACTCGAGATTTTGCAAAATTTTTTAAAAAGAAAATGGGACGTGCGATGTTTG
AGAAGAAACAAAAATTATAA
>g3541.t4 Gene=g3541 Length=117
MESKLILYLTRGSPACRSVLQLCRILDLNVELKNVNFQAKEQKSETFSKLNPLKEVPVLV
DGDFILSESRAILAYLVNSKKPNSPLYPFDPKRRAIIDQRLYYDATVLFLSHSSIVF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3541.t4 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 79 | 0.0000000 |
| 4 | g3541.t4 | Gene3D | G3DSA:1.20.1050.10 | - | 80 | 117 | 0.0000002 |
| 2 | g3541.t4 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 4 | 112 | 0.0000000 |
| 1 | g3541.t4 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 4 | 78 | 0.0000000 |
| 6 | g3541.t4 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 3 | 84 | 20.1550000 |
| 7 | g3541.t4 | SFLD | SFLDG00358 | Main (cytGST) | 6 | 105 | 0.0000000 |
| 8 | g3541.t4 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 6 | 105 | 0.0000000 |
| 3 | g3541.t4 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 4 | 88 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
