Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3541 g3541.t5 TTS g3541.t5 26290235 26290235
chr_3 g3541 g3541.t5 isoform g3541.t5 26290320 26291115
chr_3 g3541 g3541.t5 exon g3541.t5.exon1 26290320 26290484
chr_3 g3541 g3541.t5 cds g3541.t5.CDS1 26290471 26290484
chr_3 g3541 g3541.t5 exon g3541.t5.exon2 26290541 26290715
chr_3 g3541 g3541.t5 cds g3541.t5.CDS2 26290541 26290715
chr_3 g3541 g3541.t5 exon g3541.t5.exon3 26290768 26291115
chr_3 g3541 g3541.t5 cds g3541.t5.CDS3 26290768 26291115
chr_3 g3541 g3541.t5 TSS g3541.t5 26291152 26291152

Sequences

>g3541.t5 Gene=g3541 Length=688
ATGGAAAGTAAATTAATTTTATATTTAACAAGAGGTTCACCTGCATGTCGATCAGTTTTA
CAATTGTGTCGCATACTTGATCTTAATGTTGAACTCAAAAATGTAAATTTTCAAGCTAAA
GAGCAAAAGAGTGAGACTTTTTCAAAATTAAATCCTTTAAAAGAAGTTCCCGTGCTTGTT
GATGGCGATTTTATTTTGTCTGAATCGCGAGCGATTTTAGCCTATCTTGTGAACTCAAAA
AAACCAAATAGCCCTCTTTATCCTTTTGATCCAAAAAGAAGAGCAATAATTGACCAACGA
TTATATTATGATGCAACAGTGCTTTTTCTATCTCATTCATCTATTGTTCGATCAGTAATT
TATGATGGTGCAAAAGATGTCACAGATCAGCAAAGAATAAATATTCTTTCAGTTTTAGAA
AATCTTAATTATTTCTTAAGTCAATCTAAATACTTCGCAAGTAATGAGGACATAACGATA
GCTGATATTTCAATTTTATCAAGTGTAATTACTATTTATGTAAGAGTGTGGACATGATTT
AGAGGCATTTCCTTATTTATCAAAATGGTTTCACAGTTTGGAAAATTTGCCTGGATTTCA
GGAAAATCAGGAACACACTCGAGATTTTGCAAAATTTTTTAAAAAGAAAATGGGACGTGC
GATGTTTGAGAAGAAACAAAAATTATAA

>g3541.t5 Gene=g3541 Length=178
MESKLILYLTRGSPACRSVLQLCRILDLNVELKNVNFQAKEQKSETFSKLNPLKEVPVLV
DGDFILSESRAILAYLVNSKKPNSPLYPFDPKRRAIIDQRLYYDATVLFLSHSSIVRSVI
YDGAKDVTDQQRINILSVLENLNYFLSQSKYFASNEDITIADISILSSVITIYVRVWT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g3541.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 79 0.000
5 g3541.t5 Gene3D G3DSA:1.20.1050.10 - 80 176 0.000
2 g3541.t5 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 173 0.000
1 g3541.t5 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 77 0.000
8 g3541.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 3 84 20.155
7 g3541.t5 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 178 13.164
9 g3541.t5 SFLD SFLDG00358 Main (cytGST) 6 171 0.000
10 g3541.t5 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 6 171 0.000
3 g3541.t5 SUPERFAMILY SSF52833 Thioredoxin-like 4 88 0.000
4 g3541.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 90 172 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed