Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3543 g3543.t4 TTS g3543.t4 26291404 26291404
chr_3 g3543 g3543.t4 isoform g3543.t4 26292341 26295520
chr_3 g3543 g3543.t4 exon g3543.t4.exon1 26292341 26292493
chr_3 g3543 g3543.t4 cds g3543.t4.CDS1 26292341 26292493
chr_3 g3543 g3543.t4 exon g3543.t4.exon2 26292546 26292713
chr_3 g3543 g3543.t4 cds g3543.t4.CDS2 26292546 26292713
chr_3 g3543 g3543.t4 exon g3543.t4.exon3 26292772 26293069
chr_3 g3543 g3543.t4 cds g3543.t4.CDS3 26292772 26293069
chr_3 g3543 g3543.t4 exon g3543.t4.exon4 26293128 26293222
chr_3 g3543 g3543.t4 cds g3543.t4.CDS4 26293128 26293222
chr_3 g3543 g3543.t4 exon g3543.t4.exon5 26295331 26295520
chr_3 g3543 g3543.t4 cds g3543.t4.CDS5 26295331 26295426
chr_3 g3543 g3543.t4 TSS g3543.t4 26295777 26295777

Sequences

>g3543.t4 Gene=g3543 Length=904
GAGTTCATAACTTTTTTTATATTTCATTGAAAGGCCTATTGACGTGTGCTGTTGTTTTTT
GAGAATTGGTTATTTTTCCCTCGTTTTTGTGGAAATGTACGCTCATTACTATTTGGTTGT
TAAAATTCAATTAAAATATATTAAAATTCATCAAAATAATGCGTTTTTATTTTACCTGGA
ATTTAATGCGAGATTGAAGTCATATGTGAAAAAGAAGGTTATTTTTTTAAGAAAAATGTC
TTCAAAATTGGTTCTTTACTATTTGAGTGGATCTATGCCATCTAGAGCATGCATGCTTCT
TGCAAGACTCTTGAACTTAAATTTTGAAATTAAACAAGTTAATATTCCAAATAATGAACA
ATTTAATGAAGATTTTGTCAAGTTAAATCCTGCGAAAAAAATTCCTGTTTTAGTTGATGG
AGATTATGTGTTGAGTGAATCACGAGCAATACTCGCTTATTTAGTTAATTCACGCAGTCC
AGGAAGTAATTTATATCCAACAGATCCAAAACAAAGAGGAATTGTTGATCAACGATTATA
TTATGATGCAACAGTGTTTTTACCTAACATGCTTGCTGTCATTAGACCAATTGTCGTCGA
AAAAAAAACAGAAATTTCTCCAACTCTTCAAAAACCGATTGAAGAATCGCTTGAAATGAT
TGAGAGATATTTGAATGAATATGAATATGTTGCAGCATCACATTTAACAATCGCAGATAT
TTCTATGCTTCCATCAGTCACAACAGCTAGAGAATTTGGATTTAATTTAACAAAATATCC
CCGTCTCAATAAATGGCATCATAAACTTGAAACTTTACCAGGATTTGATGAGAATCTTTA
TGGATCAAAAACTAACGCAGCTTATCTGCGAAAAATGGTTAATGGACCTATCTTTAATTT
TTAA

>g3543.t4 Gene=g3543 Length=269
MYAHYYLVVKIQLKYIKIHQNNAFLFYLEFNARLKSYVKKKVIFLRKMSSKLVLYYLSGS
MPSRACMLLARLLNLNFEIKQVNIPNNEQFNEDFVKLNPAKKIPVLVDGDYVLSESRAIL
AYLVNSRSPGSNLYPTDPKQRGIVDQRLYYDATVFLPNMLAVIRPIVVEKKTEISPTLQK
PIEESLEMIERYLNEYEYVAASHLTIADISMLPSVTTAREFGFNLTKYPRLNKWHHKLET
LPGFDENLYGSKTNAAYLRKMVNGPIFNF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3543.t4 CDD cd03177 GST_C_Delta_Epsilon 139 246 0.000
7 g3543.t4 Gene3D G3DSA:3.40.30.10 Glutaredoxin 32 128 0.000
6 g3543.t4 Gene3D G3DSA:1.20.1050.10 - 130 265 0.000
3 g3543.t4 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 50 252 0.000
2 g3543.t4 Pfam PF02798 Glutathione S-transferase, N-terminal domain 53 124 0.000
1 g3543.t4 Pfam PF00043 Glutathione S-transferase, C-terminal domain 166 242 0.000
9 g3543.t4 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 50 131 22.006
8 g3543.t4 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 137 258 17.507
11 g3543.t4 SFLD SFLDG01153 Main.4: Theta-like 51 259 0.000
12 g3543.t4 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 51 259 0.000
4 g3543.t4 SUPERFAMILY SSF52833 Thioredoxin-like 50 135 0.000
5 g3543.t4 SUPERFAMILY SSF47616 GST C-terminal domain-like 129 249 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values