Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3543 g3543.t5 TTS g3543.t5 26292235 26292235
chr_3 g3543 g3543.t5 isoform g3543.t5 26292687 26295776
chr_3 g3543 g3543.t5 exon g3543.t5.exon1 26292687 26292713
chr_3 g3543 g3543.t5 cds g3543.t5.CDS1 26292687 26292713
chr_3 g3543 g3543.t5 exon g3543.t5.exon2 26292772 26293069
chr_3 g3543 g3543.t5 cds g3543.t5.CDS2 26292772 26293069
chr_3 g3543 g3543.t5 exon g3543.t5.exon3 26293128 26293225
chr_3 g3543 g3543.t5 cds g3543.t5.CDS3 26293128 26293177
chr_3 g3543 g3543.t5 exon g3543.t5.exon4 26295524 26295776
chr_3 g3543 g3543.t5 TSS g3543.t5 26295777 26295777

Sequences

>g3543.t5 Gene=g3543 Length=676
TTGACATTGTGGTGTTAAAAGTAGAAAGTTCAATTGACAACGACAACAATTAACTTATAA
ACGATTAAATTCTCAGAATCTCTGACACTCGCAGATAGTCAACTTCATGCCAACTGACCG
AAATAATCGGACTTTATTATTTCTTCTTTGTACACGCAACAGCTGTGAATGAGAGACATT
TGTACGCACATGCTGACTCTACTTGAAAAGCATTGTGAATTCAGCATGCTTCTGAGAATT
TTAATTCATTGCATAGAGATTGAAGTCATATGTGAAAAAGAAGGTTATTTTTTTAAGAAA
AATGTCTTCAAAATTGGTTCTTTACTATTTGAGTGGATCTATGCCATCTAGAGCATGCAT
GCTTCTTGCAAGACTCTTGAACTTAAATTTTGAAATTAAACAAGTTAATATTCCAAATAA
TGAACAATTTAATGAAGATTTTGTCAAGTTAAATCCTGCGAAAAAAATTCCTGTTTTAGT
TGATGGAGATTATGTGTTGAGTGAATCACGAGCAATACTCGCTTATTTAGTTAATTCACG
CAGTCCAGGAAGTAATTTATATCCAACAGATCCAAAACAAAGAGGAATTGTTGATCAACG
ATTATATTATGATGCAACAGTGTTTTTACCTAACATGCTTGCTGTCATTAGACCAATTGT
CGTCGAAAAAAAAACA

>g3543.t5 Gene=g3543 Length=125
MSSKLVLYYLSGSMPSRACMLLARLLNLNFEIKQVNIPNNEQFNEDFVKLNPAKKIPVLV
DGDYVLSESRAILAYLVNSRSPGSNLYPTDPKQRGIVDQRLYYDATVFLPNMLAVIRPIV
VEKKT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3543.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 79 2.9E-23
6 g3543.t5 Gene3D G3DSA:1.20.1050.10 - 82 125 6.2E-10
2 g3543.t5 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 124 1.1E-34
3 g3543.t5 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 124 1.1E-34
1 g3543.t5 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 78 1.8E-16
11 g3543.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
12 g3543.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
10 g3543.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 125 -
9 g3543.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 3 84 22.006
8 g3543.t5 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 125 7.433
13 g3543.t5 SFLD SFLDG00358 Main (cytGST) 5 123 8.6E-29
14 g3543.t5 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 5 123 8.6E-29
4 g3543.t5 SUPERFAMILY SSF52833 Thioredoxin-like 4 88 3.95E-23
5 g3543.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 82 121 1.18E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values