General information for g3557.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative OTU domain-containing protein 5.
Parent gene
- The parent gene g3557 is located on chr_3: 26425801..26426126 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3557 | g3557.t13 | TSS | g3557.t13 | 26424344 | 26424344 |
| chr_3 | g3557 | g3557.t13 | isoform | g3557.t13 | 26425062 | 26426126 |
| chr_3 | g3557 | g3557.t13 | exon | g3557.t13.exon1 | 26425062 | 26425249 |
| chr_3 | g3557 | g3557.t13 | cds | g3557.t13.CDS1 | 26425063 | 26425249 |
| chr_3 | g3557 | g3557.t13 | exon | g3557.t13.exon2 | 26425323 | 26425737 |
| chr_3 | g3557 | g3557.t13 | cds | g3557.t13.CDS2 | 26425323 | 26425737 |
| chr_3 | g3557 | g3557.t13 | exon | g3557.t13.exon3 | 26425793 | 26425956 |
| chr_3 | g3557 | g3557.t13 | cds | g3557.t13.CDS3 | 26425793 | 26425956 |
| chr_3 | g3557 | g3557.t13 | exon | g3557.t13.exon4 | 26426014 | 26426126 |
| chr_3 | g3557 | g3557.t13 | cds | g3557.t13.CDS4 | 26426014 | 26426126 |
| chr_3 | g3557 | g3557.t13 | TTS | g3557.t13 | 26426198 | 26426198 |
Sequences
>g3557.t13 Gene=g3557 Length=880
AATGTCAGAAATGTACAATAGACCCGTCGAATTGTATTGTTATGAGCTGGCGCCTTTAAA
TATATATAATCCAGAACAAATTAATAATGGTTACGATCCTTTACGACTATCATACCAGAG
GAATTGCCATTATAATGCGATATTAGATCCTTATAAGTCATCTGTTGGAGTTGGCTTAGG
ATTAGCAGGATATCGACCAGAAGATTTTGATCCTGCTAAACAAGTAAAAGAAGCAGTTCA
AATGAGTGAACAATTAGAAATTGAACAGATGATGGTAGAGGATAAAATGAAAGTAACGGA
TTGGGAAGCGACAAACGAAGTAGTAGTTGAACAGATAGCGCGACAATCGTATTTGCAATT
TTGTAAAGAGAGTATGCATAAGACATTTAAGAAAACAAGTACAATTACAAGCACCGCTAC
AACTGAAGCTAGCGGAAGTTCTAGTTCTTCTAGTTCAATGTGTGATACATCAAGTAATGA
TCATCAGCAAGGATCTTCAACAACATTAAATCATTATGAGAGACAAAAGAGTCCTAGTTA
TGTAGACAATTATTATATGCAACAACATAACAACACTGGAAGACGAAAGAAACGAGAGAA
AGGCGAGAAACGTAAGCAAGAGGAAGATGGATCAACAAGTTCAAAACGCGCAAAACGATC
AAATTCACCTCAAAGTTCCTCATCATCAATATCGGGTGAAAGTGACAGCGATAAGCCTGT
ATCTGCATTTTATCAATCTTTATTAGAATCATCGTATGCATCCGATGGACTTGGTCAATT
AAGTGAACAAGAAATGATGCAAAAAGCGCTGATTCAATCGATTCAAGAAGTTGCAAAAAT
AGGCAAAAATAATACAGATGACGAATACGATTCTCCATAA
>g3557.t13 Gene=g3557 Length=292
MSEMYNRPVELYCYELAPLNIYNPEQINNGYDPLRLSYQRNCHYNAILDPYKSSVGVGLG
LAGYRPEDFDPAKQVKEAVQMSEQLEIEQMMVEDKMKVTDWEATNEVVVEQIARQSYLQF
CKESMHKTFKKTSTITSTATTEASGSSSSSSSMCDTSSNDHQQGSSTTLNHYERQKSPSY
VDNYYMQQHNNTGRRKKREKGEKRKQEEDGSTSSKRAKRSNSPQSSSSSISGESDSDKPV
SAFYQSLLESSYASDGLGQLSEQEMMQKALIQSIQEVAKIGKNNTDDEYDSP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3557.t13 | Gene3D | G3DSA:3.30.200.90 | - | 1 | 60 | 3.6E-17 |
| 3 | g3557.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 171 | - |
| 6 | g3557.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 239 | - |
| 5 | g3557.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 215 | - |
| 4 | g3557.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 239 | - |
| 1 | g3557.t13 | PANTHER | PTHR12419:SF4 | OTU DOMAIN-CONTAINING PROTEIN 5 | 1 | 164 | 2.9E-36 |
| 2 | g3557.t13 | PANTHER | PTHR12419 | OTU DOMAIN CONTAINING PROTEIN | 1 | 164 | 2.9E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004843 | thiol-dependent deubiquitinase | MF |
| GO:0016579 | protein deubiquitination | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
