Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative OTU domain-containing protein 5-B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3557 g3557.t14 TSS g3557.t14 26424344 26424344
chr_3 g3557 g3557.t14 isoform g3557.t14 26425062 26426126
chr_3 g3557 g3557.t14 exon g3557.t14.exon1 26425062 26425249
chr_3 g3557 g3557.t14 cds g3557.t14.CDS1 26425063 26425249
chr_3 g3557 g3557.t14 exon g3557.t14.exon2 26425335 26425737
chr_3 g3557 g3557.t14 cds g3557.t14.CDS2 26425335 26425737
chr_3 g3557 g3557.t14 exon g3557.t14.exon3 26425793 26425956
chr_3 g3557 g3557.t14 cds g3557.t14.CDS3 26425793 26425956
chr_3 g3557 g3557.t14 exon g3557.t14.exon4 26426014 26426126
chr_3 g3557 g3557.t14 cds g3557.t14.CDS4 26426014 26426126
chr_3 g3557 g3557.t14 TTS g3557.t14 26426198 26426198

Sequences

>g3557.t14 Gene=g3557 Length=868
AATGTCAGAAATGTACAATAGACCCGTCGAATTGTATTGTTATGAGCTGGCGCCTTTAAA
TATATATAATCCAGAACAAATTAATAATGGTTACGATCCTTTACGACTATCATACCAGAG
GAATTGCCATTATAATGCGATATTAGATCCTTATAAGTCATCTGTTGGAGTTGGCTTAGG
ATTAGCAGAAGATTTTGATCCTGCTAAACAAGTAAAAGAAGCAGTTCAAATGAGTGAACA
ATTAGAAATTGAACAGATGATGGTAGAGGATAAAATGAAAGTAACGGATTGGGAAGCGAC
AAACGAAGTAGTAGTTGAACAGATAGCGCGACAATCGTATTTGCAATTTTGTAAAGAGAG
TATGCATAAGACATTTAAGAAAACAAGTACAATTACAAGCACCGCTACAACTGAAGCTAG
CGGAAGTTCTAGTTCTTCTAGTTCAATGTGTGATACATCAAGTAATGATCATCAGCAAGG
ATCTTCAACAACATTAAATCATTATGAGAGACAAAAGAGTCCTAGTTATGTAGACAATTA
TTATATGCAACAACATAACAACACTGGAAGACGAAAGAAACGAGAGAAAGGCGAGAAACG
TAAGCAAGAGGAAGATGGATCAACAAGTTCAAAACGCGCAAAACGATCAAATTCACCTCA
AAGTTCCTCATCATCAATATCGGGTGAAAGTGACAGCGATAAGCCTGTATCTGCATTTTA
TCAATCTTTATTAGAATCATCGTATGCATCCGATGGACTTGGTCAATTAAGTGAACAAGA
AATGATGCAAAAAGCGCTGATTCAATCGATTCAAGAAGTTGCAAAAATAGGCAAAAATAA
TACAGATGACGAATACGATTCTCCATAA

>g3557.t14 Gene=g3557 Length=288
MSEMYNRPVELYCYELAPLNIYNPEQINNGYDPLRLSYQRNCHYNAILDPYKSSVGVGLG
LAEDFDPAKQVKEAVQMSEQLEIEQMMVEDKMKVTDWEATNEVVVEQIARQSYLQFCKES
MHKTFKKTSTITSTATTEASGSSSSSSSMCDTSSNDHQQGSSTTLNHYERQKSPSYVDNY
YMQQHNNTGRRKKREKGEKRKQEEDGSTSSKRAKRSNSPQSSSSSISGESDSDKPVSAFY
QSLLESSYASDGLGQLSEQEMMQKALIQSIQEVAKIGKNNTDDEYDSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3557.t14 Gene3D G3DSA:3.30.200.90 - 1 60 3.5E-17
6 g3557.t14 MobiDBLite mobidb-lite consensus disorder prediction 129 167 -
5 g3557.t14 MobiDBLite mobidb-lite consensus disorder prediction 184 235 -
4 g3557.t14 MobiDBLite mobidb-lite consensus disorder prediction 197 211 -
3 g3557.t14 MobiDBLite mobidb-lite consensus disorder prediction 212 235 -
1 g3557.t14 PANTHER PTHR12419:SF4 OTU DOMAIN-CONTAINING PROTEIN 5 1 160 8.9E-33
2 g3557.t14 PANTHER PTHR12419 OTU DOMAIN CONTAINING PROTEIN 1 160 8.9E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004843 thiol-dependent deubiquitinase MF
GO:0016579 protein deubiquitination BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed