Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative OTU domain-containing protein 5-B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3557 g3557.t5 TSS g3557.t5 26422154 26422154
chr_3 g3557 g3557.t5 isoform g3557.t5 26422301 26424991
chr_3 g3557 g3557.t5 exon g3557.t5.exon1 26422301 26422351
chr_3 g3557 g3557.t5 cds g3557.t5.CDS1 26422301 26422351
chr_3 g3557 g3557.t5 exon g3557.t5.exon2 26422766 26422839
chr_3 g3557 g3557.t5 cds g3557.t5.CDS2 26422766 26422839
chr_3 g3557 g3557.t5 exon g3557.t5.exon3 26424345 26424991
chr_3 g3557 g3557.t5 cds g3557.t5.CDS3 26424345 26424990
chr_3 g3557 g3557.t5 TTS g3557.t5 NA NA

Sequences

>g3557.t5 Gene=g3557 Length=772
ATGACTATTTTGCCAATATTAAATAAGAAATCTGGAAATGAAGAAAAAGATAGAGACAAA
AGAATAAATCCTGATAGATTAAACTATGAAGTTAGACGTAGTCCAACGAGTCGTAGTAGT
AAAAGTCATGGGCGCTCCAGTAAACGTGAAAAGGCGGCAAATGGGGTACAAGTTCAAACA
AAATATCATCAGCCTCATGCCTCATCATCATCTTCCACTGCAGCAACGAGTGTAAATAAA
AAGCAACAACTGCCTTGTCCAACAAACGTTGTATCATGCGTCACACAGCAGCAAAGTCAA
CTGCACAGTGTCAGCACATCGACTGCCGTTGCTGAATGTTCTAAAAGTGATAACAATATA
GCTGGCAATAGCTGTGTGAACAAGAAAATCAATGATCAAGAATGTAATGATGACTTTTTA
AAAATTCTCGAAGAAAAAGTATCTGGCTATAATAGCGGTGATGAGCATTTGGAATCAAAA
GAAAATCACTTGACTAATGATGAATGGAAAAGTCGTGATGAAAAATTTTCAACACTACTT
GAATCTGAACGAGGTTTGATAATTAAAAACATGGAAGAAGATGGTGCATGCCTTTTTAGG
GCAATATCTTATCAAATTTACGGTGATCAAGACATGCACGATATCATAAGACAACAAACT
ATGGATTATATCTATCAGAATCGTGAATATTTTGAACAATTTCTAACTGAGGACATTCAC
TCATATGTTAAACGTAAAAGACAAAACCATCTGCATGGCAACCATATAGAAA

>g3557.t5 Gene=g3557 Length=257
MTILPILNKKSGNEEKDRDKRINPDRLNYEVRRSPTSRSSKSHGRSSKREKAANGVQVQT
KYHQPHASSSSSTAATSVNKKQQLPCPTNVVSCVTQQQSQLHSVSTSTAVAECSKSDNNI
AGNSCVNKKINDQECNDDFLKILEEKVSGYNSGDEHLESKENHLTNDEWKSRDEKFSTLL
ESERGLIIKNMEEDGACLFRAISYQIYGDQDMHDIIRQQTMDYIYQNREYFEQFLTEDIH
SYVKRKRQNHLHGNHIE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g3557.t5 Gene3D G3DSA:3.90.70.80 - 166 257 2.6E-32
6 g3557.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 80 -
7 g3557.t5 MobiDBLite mobidb-lite consensus disorder prediction 10 32 -
5 g3557.t5 MobiDBLite mobidb-lite consensus disorder prediction 52 80 -
2 g3557.t5 PANTHER PTHR12419:SF4 OTU DOMAIN-CONTAINING PROTEIN 5 28 257 4.1E-42
3 g3557.t5 PANTHER PTHR12419 OTU DOMAIN CONTAINING PROTEIN 28 257 4.1E-42
1 g3557.t5 Pfam PF02338 OTU-like cysteine protease 194 257 5.3E-8
9 g3557.t5 ProSiteProfiles PS50802 OTU domain profile. 186 257 12.36
4 g3557.t5 SUPERFAMILY SSF54001 Cysteine proteinases 168 257 1.86E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004843 thiol-dependent deubiquitinase MF
GO:0016579 protein deubiquitination BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed