Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol oxygenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3583 g3583.t1 isoform g3583.t1 26549654 26551209
chr_3 g3583 g3583.t1 exon g3583.t1.exon1 26549654 26549762
chr_3 g3583 g3583.t1 cds g3583.t1.CDS1 26549654 26549762
chr_3 g3583 g3583.t1 exon g3583.t1.exon2 26549824 26550175
chr_3 g3583 g3583.t1 cds g3583.t1.CDS2 26549824 26550175
chr_3 g3583 g3583.t1 exon g3583.t1.exon3 26550240 26550464
chr_3 g3583 g3583.t1 cds g3583.t1.CDS3 26550240 26550464
chr_3 g3583 g3583.t1 exon g3583.t1.exon4 26550894 26551030
chr_3 g3583 g3583.t1 cds g3583.t1.CDS4 26550894 26551030
chr_3 g3583 g3583.t1 exon g3583.t1.exon5 26551088 26551122
chr_3 g3583 g3583.t1 cds g3583.t1.CDS5 26551088 26551122
chr_3 g3583 g3583.t1 exon g3583.t1.exon6 26551189 26551209
chr_3 g3583 g3583.t1 cds g3583.t1.CDS6 26551189 26551209
chr_3 g3583 g3583.t1 TSS g3583.t1 NA NA
chr_3 g3583 g3583.t1 TTS g3583.t1 NA NA

Sequences

>g3583.t1 Gene=g3583 Length=879
ATGAGACTAATAATTGATGAGAATCCAAACCTTATCGACCCTTCAGAATTGTTACGTCCT
GAATTCGATTTTGTGAAAAAGGGTTTATCAAAATTTAGAGACTATACCATCGATGAAAAT
GATAAGTTGAAAGAGAGAGTTCGACAAACTTATAAAGCCATGCACACCAAACAAACTGTT
GAATTTGTGAAAAATTGTCATGAGAATTGGCTAAAATTTGATCATGCTAAAATGACTGTA
CGTCAAGCATTGGAGAAGTTGAATAATTTAGTCGATGAAAGTGATCCTGATACTACACTG
CCTAACATAGTGCATGCTTTCCAAACTGCGGAAAGAGCAAGAGTGGATTTCCCAGAACAT
GATTGGCTTCATCTTACCGGTTTAATTCATGATTTGGGAAAAATAATGGCATTTTATGGT
GAAGAACAGTGGGCTGTTGTGGGTGATACATTTGTTGTTGGATGCTTATGGTCTGATAAT
ATTGTCTATCGTAATGAAAGTTTTGAAGGAAATCCGGATGGAAAAAATCCAAAATACAAT
ACTAAGTATGGAATTTATGAGCCAAATTGTGGACTAGATAATTTACTTTTAAGCTGGGGT
CATGACGAGTATATGTATCAAGTTCTCAAGCACAATAATAGCTCACTACCAGAGCATGCT
ATGAATATTATACGATATCATTCCTTTTATCCTTGGCATTCAGCTGGTGATTATGAGCAC
TTAATGAAACCCCAAGACGATGAGACTAAAAAATGGGTGTTAATCTTTAATCGTTTCGAT
TTATATACAAAGTCATCGGAAATTCCCAACATACAAGCATTATGGCCCTATTATCAAAAA
TTAATTGACAAATATATTCCTGGTAGCCTTGAGTGGTAA

>g3583.t1 Gene=g3583 Length=292
MRLIIDENPNLIDPSELLRPEFDFVKKGLSKFRDYTIDENDKLKERVRQTYKAMHTKQTV
EFVKNCHENWLKFDHAKMTVRQALEKLNNLVDESDPDTTLPNIVHAFQTAERARVDFPEH
DWLHLTGLIHDLGKIMAFYGEEQWAVVGDTFVVGCLWSDNIVYRNESFEGNPDGKNPKYN
TKYGIYEPNCGLDNLLLSWGHDEYMYQVLKHNNSSLPEHAMNIIRYHSFYPWHSAGDYEH
LMKPQDDETKKWVLIFNRFDLYTKSSEIPNIQALWPYYQKLIDKYIPGSLEW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3583.t1 PANTHER PTHR12588 MYOINOSITOL OXYGENASE 30 292 0
3 g3583.t1 PANTHER PTHR12588:SF0 INOSITOL OXYGENASE 30 292 0
1 g3583.t1 Pfam PF05153 Myo-inositol oxygenase 44 292 0
4 g3583.t1 SUPERFAMILY SSF109604 HD-domain/PDEase-like 35 292 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019310 inositol catabolic process BP
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0005737 cytoplasm CC
GO:0050113 inositol oxygenase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed