General information for g3595.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3595 is located on chr_3: 26645043..26646656 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3595 | g3595.t2 | isoform | g3595.t2 | 26642913 | 26644710 |
| chr_3 | g3595 | g3595.t2 | exon | g3595.t2.exon1 | 26642913 | 26644051 |
| chr_3 | g3595 | g3595.t2 | cds | g3595.t2.CDS1 | 26644032 | 26644051 |
| chr_3 | g3595 | g3595.t2 | exon | g3595.t2.exon2 | 26644271 | 26644710 |
| chr_3 | g3595 | g3595.t2 | cds | g3595.t2.CDS2 | 26644271 | 26644703 |
| chr_3 | g3595 | g3595.t2 | TSS | g3595.t2 | 26645100 | 26645100 |
| chr_3 | g3595 | g3595.t2 | TTS | g3595.t2 | NA | NA |
Sequences
>g3595.t2 Gene=g3595 Length=1579
GATAGCAATGCCTGAACACACACCTGCTCCTTCCTCGTCACGTGGTATATATGGTTTTGT
AGTCTATCTGCTTTTCTACACTCTCTTCATTTTTTATATATTCTGGGCCTTTGTTCCACT
TGAAATCTTCGAAAAAATTGGTATTACTGAACTGCCAAACAAGTATTTTGTCGTATTTGT
ACCGATTCTAGTTTTGACAGGAACGACTCTTTTTGCTTTCTTTATCTATCCTGGTATAAG
CTTATGTATGACACCAGATATAAATTCATTTTATACGATAATCGACAATCATACAGTAAA
GAGATGTCAATTCAAAAATGTTGACGGTATCCTTTGCGATAATAAAATTATTCATGATTC
ATTGAGTTCATGGGACACGCAAAGTTTTTGTGAAAAACATTTTCAAAATAGAGGCATGAA
AATCAATGACTATTGTGATTCTGAAGATGGATGTTTCTGAGCTTCAACAGCTAAATCCTG
AAAATATTTATCAATGTTTTCAACTGTGGCACCATTTTTCCAACCTGGTTGTGAATGAGA
ATTGAAATGAGCAGACAATTTGATACGTAATTTGACGAGATAAATTTCCAACTGCGAATT
CTTTTGTCTATTTGCAGCAATTTCACCTTCTACTTTATTTATGCCATTATCCATATTTTC
AATATGTTTCATTAGAACAGAATTTTGTTGTTCTATTTCAATATTGTTTTTGCGAAGAGT
CTTTAATTCAGCTTCAATGATTTTATTGTGCTCAAGAAAAGCATCTGTGAAAATTGGAAG
CTCACAATTTGACGTTAAAAATGCTTTAGGAATTTCATCCTTATTAACAGCATTATTTAC
TGATTGTGTAATAGGTTTGTTACTATCATTGCTAGGTGGTTTTTGAGATGTTGATGTTGA
TTGAATGTTATTTGTAGAAACTGCTGTTGCTGCTGCTGATGTCGATGGAATATCTTGAGG
TTTTTCAACATTAGCACCCTTTTTCTTTACTTTTTTCTTTGGTGGTTCACTATCATCATT
TGGTTTATATAGTGCATTATATTCCTTCATCTCTCTAAAGTATCTGTCTTTATCGACTTG
AGCTTGATCCAAGTACGGTTTCTTTTGAACTTTATCGAGTGCAAGCCAATTAGCTGCAAT
ACGTTTTGTAATTGCTACTGGATCAAAAGTAGGATTCTCTTCACAGACTTTAGCTCTTAC
TTCATCACAATATCGAACATATGCATTTCTAAAGTACTTTGGATACTTCTCATCACGTTT
AATTTTTTTTGATTTCTTACGTTTTTTCTTTGTAACTTGCTCATCAGTGTTAATTTGTTG
TTTTACTTCATTATCTGCCGTTTGATTTGTATGCTGCGGTTGATTTAATAATGCTTCAGT
TTTAAGATTTACATCCTCAGAAGAATAAGCATTAATTTTTTCTGTCTTAATTTCTTTCTG
CTCCTGTTCACATTGTTCACTCAAACTTATTTCCATCTTTACTTATTTTTAAATAATTCC
TAGTTTTCTCTTTATGGTGTGATATATGTAAGAGAACCTCTTTTTCTCGTAATTTCTATT
CTTTTTTCCAAATATTTTT
>g3595.t2 Gene=g3595 Length=150
MPEHTPAPSSSRGIYGFVVYLLFYTLFIFYIFWAFVPLEIFEKIGITELPNKYFVVFVPI
LVLTGTTLFAFFIYPGISLCMTPDINSFYTIIDNHTVKRCQFKNVDGILCDNKIIHDSLS
SWDTQSFCEKHFQNRGMKINDYCDSEDGCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3595.t2 | PANTHER | PTHR46346 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P | 1 | 100 | 7.2E-27 |
| 1 | g3595.t2 | Pfam | PF08510 | PIG-P | 12 | 112 | 1.8E-24 |
| 6 | g3595.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 13 | - |
| 9 | g3595.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 14 | 41 | - |
| 5 | g3595.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 42 | 52 | - |
| 8 | g3595.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 53 | 74 | - |
| 7 | g3595.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 75 | 150 | - |
| 4 | g3595.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 3 | g3595.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 55 | 77 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K03861 (phosphatidylinositol N-acetylglucosaminyltransferase subunit P)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
