General information for g3603.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phospholipase D1.
Parent gene
- The parent gene g3603 is located on chr_3: 26674753..26677338 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3603 | g3603.t2 | isoform | g3603.t2 | 26671993 | 26672671 |
| chr_3 | g3603 | g3603.t2 | exon | g3603.t2.exon1 | 26671993 | 26672671 |
| chr_3 | g3603 | g3603.t2 | cds | g3603.t2.CDS1 | 26671993 | 26672529 |
| chr_3 | g3603 | g3603.t2 | TSS | g3603.t2 | NA | NA |
| chr_3 | g3603 | g3603.t2 | TTS | g3603.t2 | NA | NA |
Sequences
>g3603.t2 Gene=g3603 Length=679
AGCTGAAAATTCGATTTTTAAACGACTTTTGAGAGCTGGAATAAAAAATCCTTATGAATA
TATTTCATTTCACTCTTTACGAACATTTGCAACATTGAATGAAGTGCCGGTTACAGAACT
AATTTACGTTCATTCAAAGCTTATGATTGTCGATGATAAAACCGTAATAATTGGTTCAGC
AAACATAAATGATCGATCATTAATTGGAAAAAGAGATAGTGAAGTAGCTGTTTTGATAAA
TGATGAAGCTTTTGATGACGGGAAAATGAATGGAGAAAGCTTTCCATCGGGTCATTTTGC
AGGAAAACTAAGAAGATATTTATTTAGAGAGCATCTTGGCTTACTTGAGAACAAAAATAA
TGAAAATATAGATATAAATGATCCAATATCAGATGATTTTTACAAAAACGTTTGGCAAAA
GGTGTCGAAAGAAAATACAAAAATTTTCGATGAAGTTTTCAAATGTATCCCAAACGATTC
AGTTCGTACGATAGCTGCTTTAAAAAAATATAATGATGATCCAGCGCTATGTAAAACTGA
CGTGGAAAAGGCAGAAGAAAGATTGAAAAACATTCGAGGTCATTTAGTTGATCTTCCTTT
AGATTTCTTATGTGATGAAATTTTAACACCTTCTGGAACTAGCAAAGAAGGATTATTAAG
TACGGTAGTTTGGACATAA
>g3603.t2 Gene=g3603 Length=178
MIVDDKTVIIGSANINDRSLIGKRDSEVAVLINDEAFDDGKMNGESFPSGHFAGKLRRYL
FREHLGLLENKNNENIDINDPISDDFYKNVWQKVSKENTKIFDEVFKCIPNDSVRTIAAL
KKYNDDPALCKTDVEKAEERLKNIRGHLVDLPLDFLCDEILTPSGTSKEGLLSTVVWT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3603.t2 | Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 1 | 42 | 0.0000002 |
| 1 | g3603.t2 | PANTHER | PTHR18896:SF76 | PHOSPHOLIPASE | 1 | 164 | 0.0000000 |
| 2 | g3603.t2 | PANTHER | PTHR18896 | PHOSPHOLIPASE D | 1 | 164 | 0.0000000 |
| 5 | g3603.t2 | ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 1 | 19 | 11.5630000 |
| 3 | g3603.t2 | SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 1 | 66 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
