Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3603 g3603.t6 isoform g3603.t6 26674753 26675970
chr_3 g3603 g3603.t6 exon g3603.t6.exon1 26674753 26675970
chr_3 g3603 g3603.t6 cds g3603.t6.CDS1 26674753 26675733
chr_3 g3603 g3603.t6 TSS g3603.t6 26675976 26675976
chr_3 g3603 g3603.t6 TTS g3603.t6 NA NA

Sequences

>g3603.t6 Gene=g3603 Length=1218
TCGTTTCTTGTCTTTCATTTTAGTCGAAAGAAATCGCGCTTGTGAATTTTTTTTTGTTTG
AGATGAAAATAGTTCTTTAATTGAATTTTTTTATTAAAATATATAAGCGACAACTGACGC
CTCTGCATGTGCGATGATAAGGTTCAATTAAGTGTTCACTAATTCGTCGATATTTTCTTT
GTAGAACGAATTGAAGCAAGTAAGAATAACTCGTTAAGTGGTGAAGTCAATTACGGAATG
GAACATTCAAATACAGAACTTAATCAATTAGGAGCTATGGCAAATGCTCTAGGTAATGAG
CTTGATTTGACTGATGCTACGCTTTCACCTGATTCTGAATACGACGAAACATTAGCCTTT
CCTGATGACTCATTTTCATTCATCACATCGATTGGTCGAAATCCGGTTCTAGTTAAGCGA
CATACAAAAAATGGCGAAAATCATGAAAGCAACGATAGTTCTAGCTCTGATGATGAAATC
GATAACCGATCGACTGTCGCAAAACCTAAAAATGAACTGCCATATTCATACATCTATTCT
ACTCCCGTAAAATTTTCATCGTTCGATCGAAAAATTTTCATCCCTAACACTCAAATTCAC
GTGTCCATTACTGATTATGAAAGAAGCATGACTGCTCATCTTTTCAACCCAATTTTATAT
CAAATACAACTGACACATGGTAGCTTTACATGGACGATCAAAAAACGCTATAAAGATTTT
CTAAATCTACACAACTCATTAAAATTCTTTAGAACGTCCTTGAATTTTCCTCTTCCATCA
CGCACACATCGTGAGATACGCAGTAGCTTTCGGCATAATAATAAAATTTCAGTTTCCACA
ATCAATAACGATTCAAATACTAATATTGCAACAAGCAATAACGATGCAAGTGCTATTGCC
AATGATAATGATAAAAAAAGACAGAAGAAAAAGAAAAGAAAGAAGGGATCATTACCCCGT
TTTCCAAAACGACCTGATACTCTTATATCAACAGATCAAATTCCGATTAGAATAAAACAA
CTTGAAAATTACCTCTACAATTTATTAAACATTACTCTTTATCGCCATCATCATGACACA
ATAAATTTTTTGGAAGTTTCAAACTTTTCCTTCATTGCGGCTTTAGGTGAAAAGGGTCGT
GAAATTATGATAAAAAAAAGAACTGGTAGTACAAATCCAGGTCAAAAAAAGTGTAATCTA
CTTGGATGTTTTACATTG

>g3603.t6 Gene=g3603 Length=327
MEHSNTELNQLGAMANALGNELDLTDATLSPDSEYDETLAFPDDSFSFITSIGRNPVLVK
RHTKNGENHESNDSSSSDDEIDNRSTVAKPKNELPYSYIYSTPVKFSSFDRKIFIPNTQI
HVSITDYERSMTAHLFNPILYQIQLTHGSFTWTIKKRYKDFLNLHNSLKFFRTSLNFPLP
SRTHREIRSSFRHNNKISVSTINNDSNTNIATSNNDASAIANDNDKKRQKKKKRKKGSLP
RFPKRPDTLISTDQIPIRIKQLENYLYNLLNITLYRHHHDTINFLEVSNFSFIAALGEKG
REIMIKKRTGSTNPGQKKCNLLGCFTL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3603.t6 CDD cd06895 PX_PLD 117 288 2.34358E-48
10 g3603.t6 MobiDBLite mobidb-lite consensus disorder prediction 62 87 -
9 g3603.t6 MobiDBLite mobidb-lite consensus disorder prediction 208 245 -
3 g3603.t6 PANTHER PTHR18896:SF57 PHOSPHOLIPASE D1 98 210 1.4E-23
5 g3603.t6 PANTHER PTHR18896 PHOSPHOLIPASE D 98 210 1.4E-23
2 g3603.t6 PANTHER PTHR18896:SF57 PHOSPHOLIPASE D1 224 301 1.4E-23
4 g3603.t6 PANTHER PTHR18896 PHOSPHOLIPASE D 224 301 1.4E-23
1 g3603.t6 Pfam PF00787 PX domain 146 288 1.0E-10
11 g3603.t6 ProSiteProfiles PS50195 PX domain profile. 119 291 11.339
8 g3603.t6 SMART SM00312 PX_2 116 288 4.0E-8
7 g3603.t6 SUPERFAMILY SSF64268 PX domain 116 184 1.7E-11
6 g3603.t6 SUPERFAMILY SSF64268 PX domain 232 292 2.09E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0035091 phosphatidylinositol binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values