Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3603 g3603.t7 isoform g3603.t7 26674753 26677338
chr_3 g3603 g3603.t7 exon g3603.t7.exon1 26674753 26675786
chr_3 g3603 g3603.t7 cds g3603.t7.CDS1 26674753 26675786
chr_3 g3603 g3603.t7 exon g3603.t7.exon2 26677266 26677338
chr_3 g3603 g3603.t7 cds g3603.t7.CDS2 26677266 26677338
chr_3 g3603 g3603.t7 TSS g3603.t7 26677457 26677457
chr_3 g3603 g3603.t7 TTS g3603.t7 NA NA

Sequences

>g3603.t7 Gene=g3603 Length=1107
ATGCGACGGAGTGAATTAAGAAAAGAATTTCGTCATCATTCTCGTTCCATCAGTCAAATG
GTGGAGGAAATGGAACGAATTGAAGCAAGTAAGAATAACTCGTTAAGTGGTGAAGTCAAT
TACGGAATGGAACATTCAAATACAGAACTTAATCAATTAGGAGCTATGGCAAATGCTCTA
GGTAATGAGCTTGATTTGACTGATGCTACGCTTTCACCTGATTCTGAATACGACGAAACA
TTAGCCTTTCCTGATGACTCATTTTCATTCATCACATCGATTGGTCGAAATCCGGTTCTA
GTTAAGCGACATACAAAAAATGGCGAAAATCATGAAAGCAACGATAGTTCTAGCTCTGAT
GATGAAATCGATAACCGATCGACTGTCGCAAAACCTAAAAATGAACTGCCATATTCATAC
ATCTATTCTACTCCCGTAAAATTTTCATCGTTCGATCGAAAAATTTTCATCCCTAACACT
CAAATTCACGTGTCCATTACTGATTATGAAAGAAGCATGACTGCTCATCTTTTCAACCCA
ATTTTATATCAAATACAACTGACACATGGTAGCTTTACATGGACGATCAAAAAACGCTAT
AAAGATTTTCTAAATCTACACAACTCATTAAAATTCTTTAGAACGTCCTTGAATTTTCCT
CTTCCATCACGCACACATCGTGAGATACGCAGTAGCTTTCGGCATAATAATAAAATTTCA
GTTTCCACAATCAATAACGATTCAAATACTAATATTGCAACAAGCAATAACGATGCAAGT
GCTATTGCCAATGATAATGATAAAAAAAGACAGAAGAAAAAGAAAAGAAAGAAGGGATCA
TTACCCCGTTTTCCAAAACGACCTGATACTCTTATATCAACAGATCAAATTCCGATTAGA
ATAAAACAACTTGAAAATTACCTCTACAATTTATTAAACATTACTCTTTATCGCCATCAT
CATGACACAATAAATTTTTTGGAAGTTTCAAACTTTTCCTTCATTGCGGCTTTAGGTGAA
AAGGGTCGTGAAATTATGATAAAAAAAAGAACTGGTAGTACAAATCCAGGTCAAAAAAAG
TGTAATCTACTTGGATGTTTTACATTG

>g3603.t7 Gene=g3603 Length=369
MRRSELRKEFRHHSRSISQMVEEMERIEASKNNSLSGEVNYGMEHSNTELNQLGAMANAL
GNELDLTDATLSPDSEYDETLAFPDDSFSFITSIGRNPVLVKRHTKNGENHESNDSSSSD
DEIDNRSTVAKPKNELPYSYIYSTPVKFSSFDRKIFIPNTQIHVSITDYERSMTAHLFNP
ILYQIQLTHGSFTWTIKKRYKDFLNLHNSLKFFRTSLNFPLPSRTHREIRSSFRHNNKIS
VSTINNDSNTNIATSNNDASAIANDNDKKRQKKKKRKKGSLPRFPKRPDTLISTDQIPIR
IKQLENYLYNLLNITLYRHHHDTINFLEVSNFSFIAALGEKGREIMIKKRTGSTNPGQKK
CNLLGCFTL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3603.t7 CDD cd06895 PX_PLD 159 330 3.88722E-47
10 g3603.t7 MobiDBLite mobidb-lite consensus disorder prediction 104 129 -
9 g3603.t7 MobiDBLite mobidb-lite consensus disorder prediction 250 287 -
3 g3603.t7 PANTHER PTHR18896:SF57 PHOSPHOLIPASE D1 140 252 2.2E-23
5 g3603.t7 PANTHER PTHR18896 PHOSPHOLIPASE D 140 252 2.2E-23
2 g3603.t7 PANTHER PTHR18896:SF57 PHOSPHOLIPASE D1 266 343 2.2E-23
4 g3603.t7 PANTHER PTHR18896 PHOSPHOLIPASE D 266 343 2.2E-23
1 g3603.t7 Pfam PF00787 PX domain 188 330 1.3E-10
11 g3603.t7 ProSiteProfiles PS50195 PX domain profile. 161 333 11.339
8 g3603.t7 SMART SM00312 PX_2 158 330 4.0E-8
7 g3603.t7 SUPERFAMILY SSF64268 PX domain 158 226 1.96E-11
6 g3603.t7 SUPERFAMILY SSF64268 PX domain 274 334 2.62E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0035091 phosphatidylinositol binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed